`org.json` was included in the sources of UWS-/TAP-Lib because of a manual
small correction. This is no longer needed. So this library is now a dependency
(included in the generated JAR). This has also been upgraded to the version of
August 2018.

_This commit aims to reproduce the original content of the Pull Request #38
 by @vforchi ._

The Gradle build file, the ANT build file and the README have also been updating
so that reflecting this upgrade as well as the migration from
com.oreilly.servlet to Apache Commons File Upload.

TAPLib versions of the former commit have also been fixed.

Thus, the UPLOAD management is much more stable and relies on a well documented
and maintained library (but at the cost of the additionnal size of the final
JAR). The most important point is the capability to efficiently limit the size
of the incoming file and on the disk/memory management when uploading the
file(s) and in case of error during this process (i.e. files must be deleted).

Then, UWS or TAP implementors are free to use whatever logging system they want
(e.g. log4j, logback, ...).

divided test dependencies in compile and runtime

apply a quick space replacement (by %20) for few URIs of the configuration file
and remove duplicated entry (encoding) from the Gradle build script.

A special test has also been added in getFile(...) in order to deliver
a clear error message for users using a former version with URIs in their
configuration file (only for file_root_path and metadata_file).

Two embedded DBMS are used: H2 and a little SQLite. JDBC drivers are provided
in the `lib` directory. The databases are created and deleted automatically
by the JUnit tests (see `test/tap/db_testtools/DBTools for more details`).

The ANT and Gradle build scripts have been updated to reflect all these test
modifications.

fixed typo