Fixes #78
Fixes #60

This aims to prevent extending UserDefinedFunction for UDFs whose translation
is very simple (e.g. different name in SQL, different argument order, etc).

Fixes #115

`fix_on_fail` in the configuration file. By default, this feature is disabled.

_With 15cd5944, this commit finishes the resolution of the GitHub issue #104 ._

`upload_max_file_size` and `upload_default_db_limit`.

The property `upload_default_db_limit` has been deprecated. Indeed, in the
current state of the TAP protocol, this makes no sense: the user can not change
the limit size (in bytes or rows) for uploaded tables.

The property `upload_max_file_size` has been deprecated. It is actually
duplicated: `upload_max_db_limit`, if expressed in bytes already lets put a
limit on the maximum size of an uploaded table/file.

The property `upload_max_request_size` has been added. It lets set a maximum
size for a whole HTTP Multipart Request. By default it is set to 250MB.

The default value of `upload_max_db_size` is now 1 million rows.

The UPLOAD feature is still disabled by default (i.e. `upload_enabled=false`).

Then, UWS or TAP implementors are free to use whatever logging system they want
(e.g. log4j, logback, ...).

The end of the description of a UDF was not detected when this UDF was followed
by another UDF definition. This was due to an incorrect double quote escape in
the regular expression of a UDF's definition.

Although the Java code allowed the specification of a description of a User
Defined Function, it was not possible to set one in the UDFs listed in the
configuration file.

This commit resolves partially the issue #28

Ideally, there should be an implementation of UWSLog and TAPLog working with
Log4j and another for SLF4J (and eventually for other logging mechanism).
Additionally, an implementation storing log messages in database would be
interesting. All these ideas may be implemented in UWSLib and TAPLib in a
future version.

apply a quick space replacement (by %20) for few URIs of the configuration file
and remove duplicated entry (encoding) from the Gradle build script.

A special test has also been added in getFile(...) in order to deliver
a clear error message for users using a former version with URIs in their
configuration file (only for file_root_path and metadata_file).

This is very helpful if TAP_SCHEMA (or some of its tables and their columns)
has a different name in the database.
The mapping can be specified to JDBCConnection or directly in the configuration
file.

with a constructor having a Properties object loaded with the content
of the current configuration file.

by the TAP configuration file in order to add/remove/change some metadata or
to change the output of the TAP resource '/tables'.

[TAP] Add Javadoc for all TAP configuration file related classes + Improve the function ConfigurableServiceConnection.getFile(...) + Set the default value of limits/durations/periods to the maximum value if the new maximum value is less than the current default value.

[TAP] Add the possibility to set the FetchSize on a DB Statement for the execution of ADQL queries. It is also possible to set a fetchSize different for synchronous and asynchronous queries.

[TAP] Add a configuration file property: 'coordinate_systems'. It lets list all allowed coordinate systems. By default, the list is empty, meaning that any is allowed.

[TAP] Change the default value for output and upload limits ; only negative value must mean 'no restriction' ; 0 must be a normal allowed value.

[TAP] Allow the TAP configuration file properties 'file_root_path' and 'metadata_file' be file pathes relative to WebContent.

[TAP] Add a property in the configuration file to set a custom TAPFactory (in replacement of ConfigurableTAPFactory.

[TAP] Add a 3rd possibility to set metadata in the TAP configuration file: give an extension of TAPMetadata having either an empty constructor or a constructor with a UWSFileManager, a TAPFactory and a TAPLog. & Rename function TAPConfiguration.isClassPath(String) into TAPConfiguration.isClassName(String).

[TAP] Add property to add/replace TAP resources & Add the tool function TAPConfiguration.newInstance(...).

[TAP] Add log management in the TAP configuration file. 2 additional properties have been added: min_log_level and log_rotation.

[TAP] Add missing formats (particularly all the different VOTable serializations) in the TAP configuration file

[TAP] Add a new database access method in the configuration file: get a Datasource from JNDI. & Better support of connection pooling (TAPFactory.countFreeConnections() has been removed ; when the creation of a database connection fails with an SQLException, it is considered that no connection are momentarily available...async jobs will be queued and all sync requests will be rejected).

[TAP] Add support for user identification in the configuration file. Besides, each time a property expected as an integer is not an integer, an exception is thrown.

[TAP] Add a parameter to limit the number of running asynchronous jobs in the configuration file: max_async_jobs.

[TAP] Add metadata support in the configuration file. Two methods to get metadata: 1/ Parse an XML file implementing the schema TableSet, and then re-build TAP_SCHEMA in the database, 2/ Get metadata from the database schema TAP_SCHEMA.

[TAP] Remove the availability fields from the configuration file. The Service will always start as available ; there is indeed no reason to start and leave it as unavailable.

+ Add the management of the Output Limit in TAPConfiguration
+ All the corresponding JUnit Tests
+ Replacing .properties test files for JUnit by a construction of Properties object
+ Update of the HTML documentation page and of the Full example file

TAP+TEST: First steps with the TAP configuration file management (Factory, ServiceConnection, but not yet Metadata) + their JUnit tests + documentation (the html file + configuration file examples)