Edit examples.md

<details><summary> ScintillationDetector

</summary>

To run the example: bogemms -c 

MT.NUM.THREADS = 8

######################################################

# Selection of output files

IO.FILETYPE.FITS = true

IO.FILETYPE.SQLITE3 = false

IO.FILE.XYZ = true

#######################################################

# IO XYZ file configuration

IOXYZ.EVT_ID = true

IOXYZ.TRK_ID = true

IOXYZ.PARENT_TRK_ID = true

IOXYZ.VOLUME_ID = true

IOXYZ.VOLUME_NAME = true

IOXYZ.MOTHER_ID = true

IOXYZ.E_DEP = true

IOXYZ.X_ENT = true

IOXYZ.Y_ENT = true

IOXYZ.Z_ENT = true

IOXYZ.X_EXIT = true

IOXYZ.Y_EXIT = true

IOXYZ.Z_EXIT = true

IOXYZ.E_KIN_ENT = true

IOXYZ.E_KIN_EXIT = true

IOXYZ.MDX_ENT = true

IOXYZ.MDY_ENT = true

IOXYZ.MDZ_ENT = true

IOXYZ.MDX_EXIT = true

IOXYZ.MDY_EXIT = true

IOXYZ.MDZ_EXIT = true

IOXYZ.GTIME_ENT = true

IOXYZ.GTIME_EXIT = true

IOXYZ.PARTICLE_ID = true

IOXYZ.PARTICLE_NAME = false

IOXYZ.PROCESS_ID = true

IOXYZ.PROCESS_NAME = false

#volume selection

IOXYZ.volumeselection.number = 1

IOXYZ.volumeselection.0.start = 0

IOXYZ.volumeselection.0.end = 1000000000

#IOXYZ.volumeselection.1.start = 50000

#IOXYZ.volumeselection.1.end = 60000

#IOXYZ.volumeselection.1.start = 1

#IOXYZ.volumeselection.1.end = 2

#IOXYZ.volumeselection.2.start = 301

#IOXYZ.volumeselection.2.end = 330

#number of rows for each file

#IOXYZ.NRows  = 100000

IOXYZ.NRows  = 5000000

#write only volume with energy deposit (this do not exclude the world)

IOXYZ.writeonlyifenergydeposit = 0

#exclude the world

#NB: the world contains the initial energy and momentum

IOXYZ.removeWorldEvent = 0

########################################################

# Volume ID handling

# 1 = summing mother and grandmother ID in case of replicas

GEOM.VOLID.TYPE = 0

########################################################

# physical process

PHYS.VERSION = OPTPhys

OPTPhys.DEFAULT.CUT = 0.001

########################################################

# geometry configuration

# Print the current geometry to output

GEOM.PRINT_GEOMETRY = false

GEOM.WRITE.GDML = false

GEOM.WRITE.GDML.NAME = WFI.gdml

# setting the world dimension [mm]

WORLD.BOX.SIDE = 5000

GEOM.VERSION = Scintillator

CsI.TYPE = 1

GEOM.CAD.PATH = ../../cad_files

# Experiment = 2

#

# selecting the chamber material

VACUUM = 1

To run the example: 

`> bogemms -c CsI.conf -m beam.mac`

###### Configuration file CsI.conf:

Setting the number of threads

`MT.NUM.THREADS = 1`

Selecting the output file:

`IO.FILETYPE.FITS = true`

`IO.FILE.XYZ = true`

XYZ file configuration:

`IOXYZ.EVT_ID = true`

`IOXYZ.TRK_ID = true`

`IOXYZ.PARENT_TRK_ID = true`

`IOXYZ.VOLUME_ID = true`

`IOXYZ.VOLUME_NAME = true`

`IOXYZ.MOTHER_ID = true`

`IOXYZ.E_DEP = true`

`IOXYZ.X_ENT = true`

`IOXYZ.Y_ENT = true`

`IOXYZ.Z_ENT = true`

`IOXYZ.X_EXIT = true`

`IOXYZ.Y_EXIT = true`

`IOXYZ.Z_EXIT = true`

`IOXYZ.E_KIN_ENT = true`

`IOXYZ.E_KIN_EXIT = true`

`IOXYZ.MDX_ENT = true`

`IOXYZ.MDY_ENT = true`

`IOXYZ.MDZ_ENT = true`

`IOXYZ.MDX_EXIT = true`

`IOXYZ.MDY_EXIT = true`

`IOXYZ.MDZ_EXIT = true`

`IOXYZ.GTIME_ENT = true`

`IOXYZ.GTIME_EXIT = true`

`IOXYZ.PARTICLE_ID = true`

`IOXYZ.PARTICLE_NAME = false`

`IOXYZ.PROCESS_ID = true`

`IOXYZ.PROCESS_NAME = false`

Volume selection:

`IOXYZ.volumeselection.number = 1`

`IOXYZ.volumeselection.0.start = 0`

`IOXYZ.volumeselection.0.end = 1000000000`

Number of rows for each file:

`IOXYZ.NRows  = 5000000`

Write only volume with energy deposit (this do not exclude the world):

`IOXYZ.writeonlyifenergydeposit = 0`

Exclude the world (NB: the world contains the initial energy and momentum):

`IOXYZ.removeWorldEvent = 0`

----> Physics list:

`PHYS.VERSION = OPTPhys`

Production cut applied to all volumes in the simulation:

`OPTPhys.DEFAULT.CUT = 0.001`

----> Geometry configuration:

Setting the world dimension [mm]:

`WORLD.BOX.SIDE = 5000`

`GEOM.VERSION = Scintillator`

`CsI.TYPE = 1`

Path to the cad files used in the simulation:

`GEOM.CAD.PATH = ../../cad_files`

Selecting the chamber material:

`VACUUM = 1`

# material of the reflecting layers (from BGO side)

REFL.LAYER1.MAT = 62

REFL.LAYER2.MAT = 1

`REFL.LAYER1.MAT = 62`

`REFL.LAYER2.MAT = 1`

# absorption length [mm]

CsI.ABSL = 2000

`CsI.ABSL = 2000`

# type of reflection for the wrapper

OPTSURFACE.WRAPPER = 12