Initial repository scaffolding for TOSC completed with full documentation,...

root = true

[*.{r,R,md,txt,yml,yaml,cff}]

charset = utf-8

end_of_line = lf

insert_final_newline = true

indent_style = space

indent_size = 2

trim_trailing_whitespace = true

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# R session and history

.Rhistory

.RData

.Rproj.user/

# OS files

.DS_Store

Thumbs.db

# Logs and temporary outputs

*.log

*.tmp

*.bak

# Local output artifacts

output/*

!output/.gitkeep

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stages:

  - validate

validate:r-syntax:

  stage: validate

  image: r-base:latest

  script:

    - Rscript -e "parse(file='TOSC.r'); parse(file='input/makeTable.r'); cat('R syntax OK\n')"

  rules:

    - if: $CI_PIPELINE_SOURCE

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## Summary

Describe the bug clearly.

## Steps to Reproduce

1. 

2. 

3. 

## Expected Behavior

Describe what should happen.

## Observed Behavior

Describe what actually happened.

## Environment

- OS:

- R version:

- Input files used:

## Additional Context

Add plots, logs, or notes that help diagnosis.

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## Problem

What limitation are you trying to solve?

## Proposed Change

Describe the feature you want.

## Scientific/Technical Impact

Explain expected impact on analysis quality, speed, or usability.

## Alternatives Considered

List alternatives you evaluated.

## Additional Context

Add references, examples, or related issues.

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