add script to merge real file

#!/bin/bash

#Script to merge real data.

#Change paths according to your system

#DATES=( 20201118 20201119 20201120 )

DATES=( 20201120 )

VERSION="v0.9.2"

#SUFFIX="_tuned_main_island"

CLEANING="tailcut84"

INDIR=/fefs/aswg/workspace/alice.donini/Analysis/data/DL2/

SCRIPT="/fefs/aswg/workspace/alice.donini/Software/cta-lstchain/lstchain/scripts/lstchain_merge_hdf5_files.py"

for date in "${DATES[@]}"

do

    DIR=$INDIR/$date/$VERSION/$CLEANING/

    mkdir -p ${DIR}/merged

    FILES=`ls $DIR/dl2*.h5`

    current_run=0000

    for f in $FILES

    do

        b=$(basename $f)

        run=${b:14:-8}

        if [ "$run" -eq "$current_run" ]

        then

            continue

        else

            current_run=$run

            echo $run

            OUTNAME=${DIR}/merged/'dl2_LST-1.Run0'$run'.h5'

            if [ ! -f $OUTNAME ]

            then

                srun -p long -o $DIR/run_${run}_merge.log python $SCRIPT -d $DIR -o $OUTNAME -r $run --smart False &

            fi

        fi

    done

done