add script to merge real file

bash_scripts/merge_file.sh

+#!/bin/bash
+#Script to merge real data.
+#Change paths according to your system
+
+#DATES=( 20201118 20201119 20201120 )
+DATES=( 20201120 )
+VERSION="v0.9.2"
+#SUFFIX="_tuned_main_island"
+CLEANING="tailcut84"
+
+INDIR=/fefs/aswg/workspace/alice.donini/Analysis/data/DL2/
+SCRIPT="/fefs/aswg/workspace/alice.donini/Software/cta-lstchain/lstchain/scripts/lstchain_merge_hdf5_files.py"
+
+for date in "${DATES[@]}"
+do
+    DIR=$INDIR/$date/$VERSION/$CLEANING/
+    mkdir -p ${DIR}/merged
+    FILES=`ls $DIR/dl2*.h5`
+    current_run=0000
+    for f in $FILES
+    do
+        b=$(basename $f)
+        run=${b:14:-8}
+        if [ "$run" -eq "$current_run" ]
+        then
+            continue
+        else
+            current_run=$run
+            echo $run
+            OUTNAME=${DIR}/merged/'dl2_LST-1.Run0'$run'.h5'
+            if [ ! -f $OUTNAME ]
+            then
+                srun -p long -o $DIR/run_${run}_merge.log python $SCRIPT -d $DIR -o $OUTNAME -r $run --smart False &
+            fi
+        fi
+    done
+done