add script to convert from DL1 to DL2

bash_scripts/run_dl1_to_dl2.sh

+#!/bin/bash
+#Script to convert in DL2 data a set of DL1 REAL data.
+#Change paths according to your system
+
+#Some variables for retrieving the input files
+DATES=( 20201120 )
+#DATES=( 20201118 20201119 20201120 ) # possible to analyze more dates together
+SOURCE="Crab"
+#CONFIG=/fefs/aswg/workspace/alice.donini/Software/cta-lstchain/lstchain/data/lstchain_standard_config.json
+VERSION="v0.9.2"
+CLEANING="tailcut84"
+
+# RF files
+PATH_MODELS="/fefs/aswg/workspace/alice.donini/Analysis/data/models/source_independent"
+
+#Script (in ./cta-lstchain/lstchain/scripts/)
+SCRIPT="/fefs/aswg/workspace/alice.donini/Software/cta-lstchain/lstchain/scripts/lstchain_dl1_to_dl2.py"
+
+for date in "${DATES[@]}"
+do
+    INPUT_DIR=/fefs/aswg/workspace/alice.donini/Analysis/data/DL1/${SOURCE}/${date}/${VERSION}/${CLEANING}/
+    OUTPUT_DIR=/fefs/aswg/workspace/alice.donini/Analysis/data/DL2/${SOURCE}/${date}/${VERSION}/${CLEANING}/
+    mkdir -p ${OUTPUT_DIR}
+    mkdir -p jobs/dl2/${date}/
+    for file in $(ls ${INPUT_DIR}/ | grep dl1_LST); do
+        echo "File $file"
+        rm -rf jobs/dl2/${date}/run_${file}.sh
+        echo "#!/bin/bash
+#SBATCH -N 1
+#SBATCH --mem 100000
+ulimit -l unlimited
+ulimit -s unlimited
+ulimit -a
+        python $SCRIPT -f $INPUT_DIR$file -p $PATH_MODELS -o $OUTPUT_DIR" >> jobs/dl2/${date}/run_${file}.sh
+        # python $SCRIPT -f $INPUT_DIR$file -p $PATH_MODELS -o $OUTPUT_DIR -c $CONFIG" >> jobs/dl2/${date}/run_${file}.sh
+        chmod gu+x jobs/dl2/${date}/run_${file}.sh
+        sbatch jobs/dl2/${date}/run_${file}.sh
+    done
+done