cleanup LINCC files

node: $Format:%H$

node-date: $Format:%cI$

describe-name: $Format:%(describe:tags=true,match=*[0-9]*)$

ref-names: $Format:%D$

 No newline at end of file

# For explanation of this file and uses see

# https://git-scm.com/docs/gitattributes

# https://developer.lsst.io/git/git-lfs.html#using-git-lfs-enabled-repositories

# https://lincc-ppt.readthedocs.io/en/latest/practices/git-lfs.html

#

# Used by https://github.com/lsst/afwdata.git

# *.boost filter=lfs diff=lfs merge=lfs -text

# *.dat filter=lfs diff=lfs merge=lfs -text

# *.fits filter=lfs diff=lfs merge=lfs -text

# *.gz filter=lfs diff=lfs merge=lfs -text

#

# apache parquet files

# *.parq	filter=lfs diff=lfs merge=lfs -text

#

# sqlite files

# *.sqlite3	filter=lfs diff=lfs merge=lfs -text

#

# gzip files

# *.gz	filter=lfs diff=lfs merge=lfs -text

#

# png image files

# *.png	filter=lfs diff=lfs merge=lfs -text

.git_archival.txt export-subst

 No newline at end of file

#!/usr/bin/env bash

# Bash Unofficial strict mode (http://redsymbol.net/articles/unofficial-bash-strict-mode/) 

# and (https://disconnected.systems/blog/another-bash-strict-mode/)

set -o nounset # Any uninitialized variable is an error

set -o errexit # Exit the script on the failure of any command to execute without error

set -o pipefail # Fail command pipelines on the failure of any individual step

IFS=$'\n\t' #set internal field separator to avoid iteration errors

# Trap all exits and output something helpful

trap 's=$?; echo "$0: Error on line "$LINENO": $BASH_COMMAND"; exit $s' ERR

echo "Checking virtual environment"

if [ "${VIRTUAL_ENV:-missing}" = "missing" ] && [ "${CONDA_PREFIX:-missing}" = "missing" ]; then

    echo 'No virtual environment detected: none of $VIRTUAL_ENV or $CONDA_PREFIX is set.'

    echo

    echo "=== This script is going to install the project in the system python environment ==="

    echo "Proceed? [y/N]"

    read -r RESPONCE

    if [ "${RESPONCE}" != "y" ]; then

        echo "See https://lincc-ppt.readthedocs.io/ for details."

        echo "Exiting."

        exit 1

    fi

fi

echo "Checking pip version"

MINIMUM_PIP_VERSION=22

pipversion=( $(python -m pip --version | awk '{print $2}' | sed 's/\./\n\t/g') )

if let "${pipversion[0]}<${MINIMUM_PIP_VERSION}"; then

    echo "Insufficient version of pip found. Requires at least version ${MINIMUM_PIP_VERSION}."

    echo "See https://lincc-ppt.readthedocs.io/ for details."

    exit 1

fi

echo "Initializing local git repository"

{

    gitversion=( $(git version | git version | awk '{print $3}' | sed 's/\./\n\t/g') )

    if let "${gitversion[0]}<2"; then

	# manipulate directly

	git init . && echo 'ref: refs/heads/main' >.git/HEAD

    elif let "${gitversion[0]}==2 & ${gitversion[1]}<34"; then

	# rename master to main

	git init . && { git branch -m master main 2>/dev/null || true; };

    else

	# set the initial branch name to main

	git init --initial-branch=main >/dev/null

    fi

} > /dev/null

echo "Installing package and runtime dependencies in local environment"

python -m pip install -e . > /dev/null

echo "Installing developer dependencies in local environment"

python -m pip install -e .'[dev]' > /dev/null

if [ -f docs/requirements.txt ]; then python -m pip install -r docs/requirements.txt; fi

echo "Installing pre-commit"

pre-commit install > /dev/null

echo "Committing initial files"

git add . && SKIP="no-commit-to-branch" git commit -m "Initial commit"

#!/usr/bin/env bash

# Bash Unofficial strict mode (http://redsymbol.net/articles/unofficial-bash-strict-mode/) 

# and (https://disconnected.systems/blog/another-bash-strict-mode/)

set -o nounset # Any uninitialized variable is an error

set -o errexit # Exit the script on the failure of any command to execute without error

set -o pipefail # Fail command pipelines on the failure of any individual step

IFS=$'\n\t' #set internal field separator to avoid iteration errors

# Trap all exits and output something helpful

trap 's=$?; echo "$0: Error on line "$LINENO": $BASH_COMMAND"; exit $s' ERR

# This script should be run by new developers to install this package in

# editable mode and configure their local environment

echo "Checking virtual environment"

if [ "${VIRTUAL_ENV:-missing}" = "missing" ] && [ "${CONDA_PREFIX:-missing}" = "missing" ]; then

    echo 'No virtual environment detected: none of $VIRTUAL_ENV or $CONDA_PREFIX is set.'

    echo

    echo "=== This script is going to install the project in the system python environment ==="

    echo "Proceed? [y/N]"

    read -r RESPONCE

    if [ "${RESPONCE}" != "y" ]; then

        echo "See https://lincc-ppt.readthedocs.io/ for details."

        echo "Exiting."

        exit 1

    fi

fi

echo "Checking pip version"

MINIMUM_PIP_VERSION=22

pipversion=( $(python -m pip --version | awk '{print $2}' | sed 's/\./\n\t/g') )

if let "${pipversion[0]}<${MINIMUM_PIP_VERSION}"; then

    echo "Insufficient version of pip found. Requires at least version ${MINIMUM_PIP_VERSION}."

    echo "See https://lincc-ppt.readthedocs.io/ for details."

    exit 1

fi

echo "Installing package and runtime dependencies in local environment"

python -m pip install -e . > /dev/null

echo "Installing developer dependencies in local environment"

python -m pip install -e .'[dev]' > /dev/null

if [ -f docs/requirements.txt ]; then python -m pip install -r docs/requirements.txt > /dev/null; fi

echo "Installing pre-commit"

pre-commit install > /dev/null

#######################################################

# Include any additional configurations below this line

#######################################################