Temporarily removing osirisrex directory from branch.

include $(ISISROOT)/make/isismake.cat

include $(ISISROOT)/make/isismake.appstree

ifeq ($(ISISROOT), $(BLANK))

.SILENT:

error:

	echo "Please set ISISROOT";

else

	include $(ISISROOT)/make/isismake.apps

endif

 No newline at end of file

#include "Isis.h"

#include "Cube.h"

#include "IException.h"

#include "IString.h"

#include "OriginalLabel.h"

#include "ProcessBySample.h"

#include "ProcessImportFits.h"

#include "Pvl.h"

#include "PvlGroup.h"

#include "PvlKeyword.h"

#include "UserInterface.h"

#include <fstream>

#include <iostream>

#include <QString>

using namespace std;

using namespace Isis;

//void Convert(Buffer &buf);

void IsisMain() {

  UserInterface &ui = Application::GetUserInterface();

  ProcessImportFits importFits;

  importFits.setFitsFile(FileName(ui.GetFileName("FROM")));

  importFits.setProcessFileStructure(0);

  Cube *output = importFits.SetOutputCube("TO");

  // Get the directory where the OSIRIS-REx translation tables are.

  PvlGroup dataDir(Preference::Preferences().findGroup("DataDirectory"));

  QString transDir = (QString) dataDir["OsirisRex"] + "/translations/";

  // Temp storage of translated labels

  Pvl outLabel;

  // Get the FITS label

  Pvl fitsLabel;

  fitsLabel.addGroup(importFits.fitsLabel(0));

  // Create an Instrument group

  FileName insTransFile(transDir + "ocamsInstrument_fit.trn");

  PvlTranslationManager insXlater(fitsLabel, insTransFile.expanded());

  insXlater.Auto(outLabel);

  output->putGroup(outLabel.findGroup("Instrument", Pvl::Traverse));

  // Create a Band Bin group

  FileName bandTransFile(transDir + "ocamsBandBin_fit.trn");

  PvlTranslationManager bandBinXlater(fitsLabel, bandTransFile.expanded());

  bandBinXlater.Auto(outLabel);

  output->putGroup(outLabel.findGroup("BandBin", Pvl::Traverse));

  // Create an Archive group

  // OREx team reduced the output keywords, so this was commented out

  // Remove if all goes well with next release

  //FileName archiveTransFile(transDir + "ocamsArchive_fit.trn");

  //PvlTranslationManager archiveXlater(fitsLabel, archiveTransFile.expanded());

  //archiveXlater.Auto(outLabel);

  //output->putGroup(outLabel.findGroup("Archive", Pvl::Traverse));

  // Create a Kernels group

  FileName kernelsTransFile(transDir + "ocamsKernels_fit.trn");

  PvlTranslationManager kernelsXlater(fitsLabel, kernelsTransFile.expanded());

  kernelsXlater.Auto(outLabel);

  output->putGroup(outLabel.findGroup("Kernels", Pvl::Traverse));

  // Save the input FITS label in the Cube original labels

  Pvl pvl;

  pvl += importFits.fitsLabel(0);

  OriginalLabel originals(pvl);

  output->write(originals);

  // Convert the image data

  //importFits.StartProcess(Convert);

  importFits.StartProcess();

  importFits.Finalize();

}

/*void Convert(Buffer &buf) {

  for (int i=0; i<buf.size(); i++) {

    cout << buf[i] << endl;

  }

}*/

<?xml version="1.0" encoding="UTF-8"?>

<application name="ocams2isis" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://isis.astrogeology.usgs.gov/Schemas/Application/application.xsd">

  <brief>

    Import Osiris Rex Camera Suite (OCAMS) files into ISIS format.

  </brief>

  <description>

    <p>

      This program will import FITS (Flexible Image Transport System) formatted files from the 

      Osiris Rex MapCam, SamCam, and PolyCam instruments into ISIS cube formatted files. 

    </p>

  </description>

  <history>

    <change name="Janet Barrett" date="2014-04-02">

      Original version

    </change> 

    <change name="Stuart C. Sides" date="2015-09-28">

      Updated to only include labels requested by the OSIRIS-REx team

    </change> 

  </history>

  <seeAlso>

    <applications>

      <item>fits2isis</item>

    </applications>

  </seeAlso>

  <category>

    <categoryItem>Osiris Rex</categoryItem>

  </category>

  <groups>

    <group name="Files">

      <parameter name="FROM">

        <type>filename</type>

        <fileMode>input</fileMode>

        <brief>

          An Osiris Rex OCAMS FITS file to be converted to an ISIS cube.

        </brief>

        <description>

          Use this parameter to select the filename of an Osiris Rex MapCam, SamCam,

          or PolyCam file to be converted to an ISIS cube. This is expected to be a 

          FITS formatted file. 

        </description>

        <filter>

          *.fits

        </filter>

      </parameter>

      <parameter name="TO">

        <type>cube</type>

        <fileMode>output</fileMode>

        <brief>

          Output ISIS cube file

        </brief>

        <description>

          The output cube file that will contain the Osiris Rex OCAMS image in ISIS format.

        </description>

        <filter>

          *.cub

        </filter>

      </parameter>

    </group>

  </groups>

</application>