Merged ProcessImport, ProcessImportFits, SpecialPixel changes from prior... (96f25004) · Commits · aflab / astrogeology / ISIS3

isis/IsisPreferences

+0 −1

Original line number	Diff line number	Diff line
		@@ -176,7 +176,6 @@ Group = DataDirectory
		Near = $ISIS3DATA/near
		NewHorizons = $ISIS3DATA/newhorizons
		Odyssey = $ISIS3DATA/odyssey
		OsirisRex = $ISIS3DATA/../datalocal/osirisrex
		Rolo = $ISIS3DATA/rolo
		Rosetta = $ISIS3DATA/rosetta
		Smart1 = $ISIS3DATA/smart1

isis/src/base/objs/ProcessImport/ProcessImport.cpp

+191 −80

Original line number	Diff line number	Diff line
		@@ -41,6 +41,9 @@
		#include "PvlTokenizer.h"
		#include "SpecialPixel.h"


		//tjw
		//VAX Conversion
		#define EXPONENT_MASK ((char) 0x7F)


		@@ -83,6 +86,7 @@ namespace Isis {
		p_saveFileTrailer = false;
		p_vax_convert = false;


		p_fileHeader = NULL;
		p_fileTrailer = NULL;
		}
		@@ -119,6 +123,9 @@ namespace Isis {
		}
		}

		//tjw:



		/**
		* Determines if the VAX encoded pixel value is special or not
		@@ -129,8 +136,12 @@ namespace Isis {
		* type matches that pointed to by vax. Returns false
		* otherwise.
		*/


		bool ProcessImport::IsVAXSpecial(unsigned int *vax, VAXSpecialPixel pix){



		unsigned int VAX_NULL = 0xFFFFFFFF;
		unsigned int VAX_MIN = 0xFFEFFFFF;
		unsigned int VAX_LRS = 0xFFFEFFFF;
		@@ -143,38 +154,65 @@ namespace Isis {
		memcpy(&x,vax,sizeof(unsigned int));

		switch(pix) {

		case VAX_NULL4:
		n=memcmp(&VAX_NULL,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0){
		return true;

		}
		break;

		case VAX_LRS4:
		n=memcmp(&VAX_LRS,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0){

		return true;
		}
		break;

		case VAX_LIS4:
		n=memcmp(&VAX_LIS,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0) {

		return true;
		}
		break;

		case VAX_HIS4:
		n=memcmp(&VAX_HIS,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0){

		return true;
		}
		break;

		case VAX_HRS4:
		n=memcmp(&VAX_HRS,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0){

		return true;
		}
		break;

		case VAX_MIN4:
		n=memcmp(&VAX_MIN,&x,sizeof(unsigned int));
		if (n == 0) return true;
		if (n==0){

		return true;
		}
		break;

		default:
		return false;

		}

		return false;

		}

		//tjw

		/**
		* Conversion routine which translates VAX_REAL to IEEE_REAL
		@@ -182,8 +220,11 @@ namespace Isis {
		* @param ibuf Memory buffer of input data to be converted
		* @return double the converted value
		*/

		double ProcessImport::VAXConversion(void *ibuf) {



		float result;
		double dresult;
		bool swap_bytes = false;
		@@ -195,14 +236,19 @@ namespace Isis {
		Isis::ByteOrder in_order = p_byteOrder;
		Isis::ByteOrder out_order;


		unsigned int oli, ili; //4-byte buffer io ptrs
		unsigned short *osi; //2-byte buffer io ptrs
		char *oci; //1-byte buffer io ptrs

		if ( Isis::IsLsb() ) {

		exp_byte = 1;
		out_order = Isis::Lsb;

		}

		//Byte order = MSB
		else {
		exp_byte = 0;
		out_order = Isis::Msb;
		@@ -210,37 +256,33 @@ namespace Isis {

		if (in_order != out_order) {
		swap_bytes =true;

		}

		oli = (unsigned int * ) ibuf;
		ili = (unsigned int * ) ibuf;

		if (IsVAXSpecial(oli, ProcessImport::VAX_NULL4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_NULL4) )
		return Isis::NULL8;
		}

		if (IsVAXSpecial(oli, ProcessImport::VAX_LIS4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_LIS4) )
		return Isis::LOW_INSTR_SAT8;
		}

		if (IsVAXSpecial(oli, ProcessImport::VAX_LRS4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_LRS4) )
		return Isis::LOW_REPR_SAT8;
		}

		if (IsVAXSpecial(oli, ProcessImport::VAX_HIS4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_HIS4) )
		return Isis::HIGH_INSTR_SAT8;
		}

		if (IsVAXSpecial(oli, ProcessImport::VAX_HRS4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_HRS4) )
		return Isis::HIGH_REPR_SAT8;
		}

		if (IsVAXSpecial(oli, ProcessImport::VAX_MIN4) ) {
		if (IsVAXSpecial(oli,ProcessImport::VAX_MIN4) )
		return Isis::VALID_MIN8;
		}

		//test for word swapping
		if (swap_words) {

		oli = (ili <<16) \| (*ili >> 16);
		}

		@@ -256,9 +298,8 @@ namespace Isis {
		//Isolate the exponent and do the conversion
		oci = (char *) &osi[exp_word];

		if ( (oci[exp_byte] & EXPONENT_MASK) != exp_mask) {
		if ( (oci[exp_byte] & EXPONENT_MASK) != exp_mask)
		oci[exp_byte] += exp_adjust;
		}

		result = (float )oli;
		dresult = static_cast<double>(result);
		@@ -267,6 +308,9 @@ namespace Isis {
		}





		/**
		* Sets the pixel type of the input file.
		*
		@@ -278,8 +322,7 @@ namespace Isis {
		void ProcessImport::SetPixelType(const Isis::PixelType type) {

		if ((type == Isis::Double) \|\| (type == Isis::Real) \|\| (type == Isis::SignedWord) \|\|
		(type == Isis::UnsignedWord) \|\| (type == Isis::UnsignedByte) \|\|
		(type == Isis::SignedInteger)) {
		(type == Isis::UnsignedWord) \|\| (type == Isis::UnsignedByte)) {
		p_pixelType = type;
		}
		else {
		@@ -287,7 +330,7 @@ namespace Isis {
		Isis::PixelTypeName(type) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};

		void ProcessImport::SetSuffixPixelType(const Isis::PixelType type) {

		@@ -300,7 +343,7 @@ namespace Isis {
		Isis::PixelTypeName(type) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -317,16 +360,20 @@ namespace Isis {
		*/
		void ProcessImport::SetDimensions(const int ns, const int nl, const int nb) {
		if (ns > 0 && nl > 0 && nb > 0) {


		p_ns = ns;
		p_nl = nl;
		p_nb = nb;


		}
		else {
		QString msg = "Illegal dimension [" + toString(ns) + ", " +
		toString(nl) + ", " + toString(nb) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -337,7 +384,7 @@ namespace Isis {
		*/
		void ProcessImport::SetByteOrder(const Isis::ByteOrder order) {
		p_byteOrder = order;
		}
		};


		/**
		@@ -363,12 +410,13 @@ namespace Isis {
		void ProcessImport::SetFileHeaderBytes(const int bytes) {
		if (bytes >= 0) {
		p_fileHeaderBytes = bytes;

		}
		else {
		QString msg = "Illegal file header size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -398,7 +446,7 @@ namespace Isis {
		QString msg = "Illegal file trailer size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -421,18 +469,26 @@ namespace Isis {
		*/
		void ProcessImport::SetDataHeaderBytes(const int bytes) {
		if (bytes >= 0) {

		p_dataHeaderBytes = bytes;

		}
		else {
		QString msg = "Illegal data header size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		void ProcessImport::SetSuffixOffset(int samples,int lines, int coreBands,int itemBytes){


		p_suffixData = sampleslinescoreBands*itemBytes;
		}




		};


		/**
		@@ -463,7 +519,7 @@ namespace Isis {
		QString msg = "Illegal data trailer size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -488,12 +544,13 @@ namespace Isis {

		if (bytes >= 0) {
		p_dataPreBytes = bytes;

		}
		else {
		QString msg = "Illegal data prefix size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -518,12 +575,13 @@ namespace Isis {

		if (bytes >= 0) {
		p_dataPostBytes = bytes;

		}
		else {
		QString msg = "Illegal data suffix size [" + toString(bytes) + "]";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		}
		};


		/**
		@@ -550,7 +608,7 @@ namespace Isis {
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		p_saveFileHeader = true;
		}
		};


		/**
		@@ -578,7 +636,7 @@ namespace Isis {
		_FILEINFO_);
		}
		p_saveFileTrailer = true;
		}
		};


		/**
		@@ -607,7 +665,7 @@ namespace Isis {
		_FILEINFO_);
		}
		p_saveDataHeader = true;
		}
		};


		/**
		@@ -636,7 +694,7 @@ namespace Isis {
		_FILEINFO_);
		}
		p_saveDataTrailer = true;
		}
		};


		/**
		@@ -664,7 +722,7 @@ namespace Isis {
		_FILEINFO_);
		}
		p_saveDataPre = true;
		}
		};


		/**
		@@ -693,7 +751,7 @@ namespace Isis {
		_FILEINFO_);
		}
		p_saveDataPost = true;
		}
		};


		/**
		@@ -770,7 +828,7 @@ namespace Isis {
		}
		QString msg = "File header was not saved. Use SaveFileHeader().";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -796,7 +854,7 @@ namespace Isis {
		}
		QString msg = "File trailer was not saved. Use SaveFileTrailer()";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -824,7 +882,7 @@ namespace Isis {
		}
		QString msg = "Data header was not saved. Use SaveDataHeader()";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -852,7 +910,7 @@ namespace Isis {
		}
		QString msg = "Data trailer was not saved. Use SaveDataTrailer()";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -880,7 +938,7 @@ namespace Isis {
		}
		QString msg = "Data prefix was not saved. Use SaveDataPrefix()";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -908,7 +966,7 @@ namespace Isis {
		}
		QString msg = "Data suffix was not saved. Use SaveDataSuffix()";
		throw IException(IException::Programmer, msg, _FILEINFO_);
		}
		};


		/**
		@@ -920,9 +978,11 @@ namespace Isis {
		*/
		void ProcessImport::SetOrganization(const ProcessImport::Interleave org) {
		p_organization = org;
		}

		};


		//tjw:
		/**
		* Sets the VAX flag of the input cube. If true, then the core pixel type of
		* the input cube is VAX, and VAX conversion routines need to be run to
		@@ -930,9 +990,15 @@ namespace Isis {
		*
		* @param vax_convert Flag indicating whether or not to run VAX conersion methods
		*/



		void ProcessImport::SetVAXConvert(const bool vax_convert){


		p_vax_convert = vax_convert;
		}

		};


		/**
		@@ -941,7 +1007,7 @@ namespace Isis {
		*/
		ProcessImport::Interleave ProcessImport::Organization() const {
		return p_organization;
		}
		};


		/**
		@@ -952,7 +1018,7 @@ namespace Isis {
		void ProcessImport::SetBase(const double base) {
		p_base.clear();
		p_base.push_back(base);
		}
		};


		/**
		@@ -962,7 +1028,7 @@ namespace Isis {
		*/
		void ProcessImport::SetBase(const std::vector<double> base) {
		p_base = base;
		}
		};


		/**
		@@ -973,7 +1039,7 @@ namespace Isis {
		void ProcessImport::SetMultiplier(const double mult) {
		p_mult.clear();
		p_mult.push_back(mult);
		}
		};


		/**
		@@ -983,7 +1049,7 @@ namespace Isis {
		*/
		void ProcessImport::SetMultiplier(const std::vector<double> mult) {
		p_mult = mult;
		}
		};


		/**
		@@ -1012,7 +1078,7 @@ namespace Isis {
		SetLIS(lis, lis);
		SetHRS(hrs, hrs);
		SetHIS(his, his);
		}
		};


		/**
		@@ -1222,10 +1288,6 @@ namespace Isis {
		min = Isis::VALID_MIN4;
		max = Isis::VALID_MAX4;
		}
		else if (p_pixelType == Isis::SignedInteger) {
		min = Isis::IVALID_MIN4;
		max = Isis::IVALID_MAX4;
		}
		else if (p_pixelType == Isis::SignedWord) {
		min = Isis::VALID_MIN2 * p_mult[0] + p_base[0];
		max = Isis::VALID_MAX2 * p_mult[0] + p_base[0];
		@@ -1251,8 +1313,7 @@ namespace Isis {
		if ((p_base.size() > 1) \|\| (p_mult.size() > 1)) {
		att.setPixelType(Isis::Real);
		}
		else if (p_pixelType == Isis::UnsignedWord \|\| p_pixelType == Isis::Double \|\|
		p_pixelType == Isis::SignedInteger) {
		else if (p_pixelType == Isis::UnsignedWord \|\| p_pixelType == Isis::Double) {
		att.setPixelType(Isis::Real);
		}
		else {
		@@ -1346,6 +1407,8 @@ namespace Isis {
		* Position[]. Byte count[]"
		*/
		void ProcessImport::ProcessBsq(void funct(Isis::Buffer &out)) {


		// Figure out the number of bytes to read for a single line
		int readBytes = Isis::SizeOf(p_pixelType);
		readBytes = readBytes * p_ns;
		@@ -1368,6 +1431,9 @@ namespace Isis {

		// Handle the file header
		streampos pos = fin.tellg();
		//tjw


		if (p_saveFileHeader) {
		p_fileHeader = new char[p_fileHeaderBytes];
		fin.read(p_fileHeader, p_fileHeaderBytes);
		@@ -1413,14 +1479,19 @@ namespace Isis {
		mult = p_mult[0];
		}


		// Handle any data headers (e.g., the data at the beginning of each band)
		pos = fin.tellg();
		if (p_saveDataHeader) {
		p_dataHeader.push_back(new char[p_dataHeaderBytes]);
		fin.read(p_dataHeader.back(), p_dataHeaderBytes);

		}
		else {
		//cout << p_suffixData << endl;
		fin.seekg(p_dataHeaderBytes, ios_base::cur);


		}

		// Check the last io
		@@ -1455,6 +1526,7 @@ namespace Isis {
		throw IException(IException::Io, msg, _FILEINFO_);
		}


		// Get a line of data from the input file
		pos = fin.tellg();
		fin.read(in, readBytes);
		@@ -1470,34 +1542,37 @@ namespace Isis {
		for(int samp = 0; samp < p_ns; samp++) {
		switch(p_pixelType) {
		case Isis::UnsignedByte:
		//cout << "UnsignedByte" << endl;
		(out)[samp] = (double)((unsigned char )in)[samp];
		break;
		case Isis::UnsignedWord:
		//cout << "Unsigned word."<< endl;
		(*out)[samp] =
		(double)swapper.UnsignedShortInt((unsigned short int *)in+samp);
		break;
		case Isis::SignedWord:
		//cout << "Signed Word." << endl;
		(out)[samp] = (double)swapper.ShortInt((short int )in+samp);
		break;
		case Isis::SignedInteger:
		(out)[samp] = (double)swapper.Int((int )in+samp);
		break;
		case Isis::Real:
		if(p_vax_convert) {
		//tjw:
		if(p_vax_convert)
		(out)[samp]= VAXConversion( (float )in+samp );
		}
		else {
		else
		(out)[samp] = (double)swapper.Float((float )in+samp);
		}

		break;
		case Isis::Double:
		//cout << "Double" << endl;
		(out)[samp] = (double)swapper.Double((double )in+samp);
		break;


		default:
		break;
		}


		(out)[samp] = TestPixel((out)[samp]);

		if (Isis::IsValidPixel((*out)[samp])) {
		@@ -1596,6 +1671,10 @@ namespace Isis {
		}






		/**
		* Function to process files stored as Band Interleaved by Line
		*
		@@ -1631,6 +1710,8 @@ namespace Isis {
		// Handle the file header
		streampos pos = fin.tellg();



		if (p_saveFileHeader) {
		p_fileHeader = new char[p_fileHeaderBytes];
		fin.read(p_fileHeader, p_fileHeaderBytes);
		@@ -1638,8 +1719,21 @@ namespace Isis {
		}
		else {
		fin.seekg(p_fileHeaderBytes+p_suffixData, ios_base::beg);
		//fin.seekg(p_fileHeaderBytes, ios_base::beg);
		}


		#if 0
		if (p_saveFileHeader) {
		p_fileHeader = new char[p_fileHeaderBytes];
		fin.read(p_fileHeader, p_fileHeaderBytes);
		}
		else {
		fin.seekg(p_fileHeaderBytes, ios_base::beg);
		}
		#endif


		// Check the last io
		if (!fin.good()) {
		QString msg = "Cannot read file [" + p_inFile + "]. Position [" +
		@@ -1734,16 +1828,12 @@ namespace Isis {
		case Isis::SignedWord:
		(out)[samp] = (double)swapper.ShortInt((short int )in+samp);
		break;
		case Isis::SignedInteger:
		(out)[samp] = (double)swapper.Int((int )in+samp);
		break;
		case Isis::Real:
		if(p_vax_convert) {
		//tjw:
		if(p_vax_convert)
		(out)[samp]= VAXConversion( (float )in+samp );
		}
		else {
		else
		(out)[samp] = (double)swapper.Float((float )in+samp);
		}
		break;
		case Isis::Double:
		(out)[samp] = (double)swapper.Double((double )in+samp);
		@@ -1789,6 +1879,7 @@ namespace Isis {
		throw IException(IException::Io, msg, _FILEINFO_);
		}


		// Save off the prefix bytes vector
		if (p_saveDataPre) {
		p_dataPre.push_back(tempPre);
		@@ -1836,6 +1927,7 @@ namespace Isis {
		// Close the file and clean up
		fin.close();
		delete [] in;

		}


		@@ -1851,6 +1943,7 @@ namespace Isis {
		*/
		void ProcessImport::ProcessBip(void funct(Isis::Buffer &out)) {


		// Figure out the number of bytes to read for a single line
		int readBytes = Isis::SizeOf(p_pixelType);
		readBytes = readBytes * p_ns * p_nb;
		@@ -1872,6 +1965,8 @@ namespace Isis {
		}

		// Handle the file header

		//tjw
		streampos pos = fin.tellg();
		if (p_saveFileHeader) {
		p_fileHeader = new char[p_fileHeaderBytes];
		@@ -1880,8 +1975,23 @@ namespace Isis {
		}
		else {
		fin.seekg(p_fileHeaderBytes+p_suffixData, ios_base::beg);
		//fin.seekg(p_fileHeaderBytes, ios_base::beg);
		}



		#if 0

		if (p_saveFileHeader) {
		p_fileHeader = new char[p_fileHeaderBytes];
		fin.read(p_fileHeader, p_fileHeaderBytes);
		}
		else {
		fin.seekg(p_fileHeaderBytes, ios_base::beg);
		}

		#endif

		// Check the last io
		if (!fin.good()) {
		QString msg = "Cannot read file [" + p_inFile + "]. Position [" +
		@@ -1919,6 +2029,7 @@ namespace Isis {
		// Space for storing prefix and suffix data pointers
		vector<char *> tempPre, tempPost;


		// Handle any line prefix bytes
		pos = fin.tellg();
		if (p_saveDataPre) {
		@@ -1976,16 +2087,12 @@ namespace Isis {
		case Isis::SignedWord:
		(out)[osamp] = (double)swapper.ShortInt((short int )in+samp);
		break;
		case Isis::SignedInteger:
		(out)[samp] = (double)swapper.Int((int )in+samp);
		break;
		case Isis::Real:
		if(p_vax_convert) {
		//tjw:
		if(p_vax_convert)
		(out)[osamp]= VAXConversion( (float )in+samp );
		}
		else {
		else
		(out)[osamp] = (double)swapper.Float((float )in+samp);
		}
		break;
		case Isis::Double:
		(out)[osamp] = (double)swapper.Double((double )in+samp);
		@@ -2303,4 +2410,8 @@ namespace Isis {
		return p_inFile;
		}


		}

isis/src/base/objs/ProcessImport/ProcessImport.h

+34 −37

Original line number	Diff line number	Diff line
		@@ -139,34 +139,29 @@ namespace Isis {
		* documentation. Changed parameter name from
		* "parameter" to "fname" in SetOutputCube() method.
		* References #1248.
		* @history 2015-01-15 Sasha Brownsberger - Added virtual keyword to several functions
		* to ensure successful inheritance between Process and its
		* child classes. Added virtual keyword to destructor. References #2215.
		* @history 2015-01-15 Sasha Brownsberger - Added virtual keyword to several
		* functions to ensure successful
		* inheritance between Process and its
		* child classes. Added virtual keyword
		* to destructor. References #2215.
		*
		* * to destructor. References #2215.
		* @history 2016-02-23 Tyler Wilson - Added VAXConversion(...) and IsVAXSpecial(...) routines
		* for importing Galileo NIMS qubs which were originally saved in
		* VAX format. Also added SetSuffixOffset for reading suffix
		* band data from NIMS cubes. References #2368.
		* @history 2016-04-20 Jeannie Backer - Merged Janet Barret's changes to handle SignedInteger
		* imports. Brought code closer to coding standards.
		*
		*
		*/
		class ProcessImport : public Isis::Process {
		public:
		enum VAXDataType {
		VAX_REAL,
		VAX_INT
		};


		enum VAXSpecialPixel {
		VAX_MIN4,
		VAX_NULL4,
		VAX_LRS4,
		VAX_LIS4,
		VAX_HIS4,
		VAX_HRS4
		};



		class ProcessImport : public Isis::Process {
		public:
		enum VAXDataType {VAX_REAL, VAX_INT};
		enum VAXSpecialPixel { VAX_MIN4,VAX_NULL4,VAX_LRS4,VAX_LIS4,VAX_HIS4,VAX_HRS4};

		ProcessImport();
		virtual ~ProcessImport();
		@@ -181,7 +176,6 @@ namespace Isis {
		Isis::Cube *SetOutputCube(const QString &parameter);
		virtual Isis::Cube *SetOutputCube(const QString &fname,
		Isis::CubeAttributeOutput &att);

		void SetPixelType(const Isis::PixelType type);
		/**
		* Returns the pixel type
		@@ -190,8 +184,6 @@ namespace Isis {
		Isis::PixelType PixelType() {
		return p_pixelType;
		}


		void SetDimensions(const int ns, const int nl, const int nb);

		/**
		@@ -202,7 +194,6 @@ namespace Isis {
		return p_ns;
		}


		/**
		* Returns the number of lines
		* @return The number of lines
		@@ -211,7 +202,6 @@ namespace Isis {
		return p_nl;
		}


		/**
		* Returns the number of bands
		* @return The number of bands
		@@ -220,7 +210,6 @@ namespace Isis {
		return p_nb;
		}


		void SetByteOrder(const Isis::ByteOrder order);

		/**
		@@ -231,12 +220,16 @@ namespace Isis {
		return p_byteOrder;
		}


		//tjw: VAX_REAL -> IEEE_REAL

		bool IsVAXSpecial(unsigned int *vax,VAXSpecialPixel pix);
		double VAXConversion(void *ibuf);
		void SetSuffixOffset(int samples,int lines, int coreBands,int itemBytes);
		void SetSuffixPixelType(const Isis::PixelType type);
		void SetVAXConvert(const bool vax_convert);


		void SetFileHeaderBytes(const int bytes);
		void SetFileTrailerBytes(const int bytes);
		void SetDataHeaderBytes(const int bytes);
		@@ -283,8 +276,6 @@ namespace Isis {
		all bands is followed by the second pixel for
		all bands.*/
		};


		void SetOrganization(const ProcessImport::Interleave org);
		Interleave Organization() const;

		@@ -304,13 +295,6 @@ namespace Isis {

		double TestPixel(const double pixel);

		void ProcessBsq(void funct(Isis::Buffer &out) = NULL);
		void ProcessBil(void funct(Isis::Buffer &out) = NULL);
		void ProcessBip(void funct(Isis::Buffer &out) = NULL);
		void ProcessJp2(void funct(Isis::Buffer &out) = NULL);

		void CheckPixelRange(QString pixelName, double min, double max);

		#if 0
		void AddImportLabel(Isis::Pvl &importLab);
		void AddLabel(Isis::Pvl &label);
		@@ -321,14 +305,16 @@ namespace Isis {
		QString p_inFile; //!< Input file name
		Isis::PixelType p_pixelType; //!< Pixel type of input data

		Isis::PixelType p_suffixPixelType; //!< The pixel type of the suffix data.
		//tjw
		Isis::PixelType p_suffixPixelType; //!< Pixel type of suffix data (for Galileo NIMS cubes)
		int p_ns; //!< Number of samples
		int p_nl; //!< Number of lines
		int p_nb; //!< Number of bands
		Isis::ByteOrder p_byteOrder; //!< Byte order of data

		int p_suffixData; /**< The number of bytes past the file header bytes
		where the suffix data bands are stored.*/
		//tjw
		int p_suffixData; //!< Number of bytes past the file header bytes
		//!< where the suffix data bands are stored


		int p_fileHeaderBytes; /**< The number of bytes of non-image data at
		@@ -372,6 +358,10 @@ namespace Isis {
		std::vector<std::vector<char *> >p_dataPost; //!< The data suffix
		char *p_fileTrailer; //!< The file trailer



		//tjw

		bool p_vax_convert;

		ProcessImport::Interleave p_organization; /**< The format of the input
		@@ -429,6 +419,13 @@ namespace Isis {
		double p_lis_max; /**< The pixel value which is the upper bound of LIS
		data. All pixels between this value and the min
		will be converted to the Isis LIS value.*/

		void ProcessBsq(void funct(Isis::Buffer &out) = NULL);
		void ProcessBil(void funct(Isis::Buffer &out) = NULL);
		void ProcessBip(void funct(Isis::Buffer &out) = NULL);
		void ProcessJp2(void funct(Isis::Buffer &out) = NULL);

		void CheckPixelRange(QString pixelName, double min, double max);
		};
		};
		#endif

isis/src/base/objs/ProcessImportFits/ProcessImportFits.cpp

+4 −3

Original line number	Diff line number	Diff line
		@@ -294,8 +294,8 @@ namespace Isis {
		* (DataPrefixBytes + DataSuffixByte) / PixelSize is subtracted from the number of samples before
		* the output file is created.
		*
		* @param labelNumber FITS label number. Zero indicates the first/main label, one indicates the
		* first extension, etc...
		* @param labelNumber FITS label number. zero (0) is the first/main label. one (1) is the first
		* extension, ...
		*
		*/
		void ProcessImportFits::setProcessFileStructure(int labelNumber) {
		@@ -325,7 +325,8 @@ namespace Isis {
		type = Isis::SignedWord;
		break;
		case 32:
		type = Isis::SignedInteger;
		msg = "Signed 32 bit integer (int) pixel type is not supported at this time";
		throw IException(IException::User, msg, _FILEINFO_);
		break;
		case -32:
		type = Isis::Real;

isis/src/base/objs/ProcessImportFits/ProcessImportFits.h

+3 −3

Original line number	Diff line number	Diff line
		@@ -42,9 +42,9 @@ namespace Isis {
		* @internal
		* @history 2014-06-06 Stuart Sides - Added ability to read and process the FITS extension
		* @history 2015-01-15 Sasha Brownsberger - Made destructor virtual. References #2215.
		* @history 2015-06-02 Kristin Berry - Added error for use of unsupported BIP organization.
		* @history 2016-04-20 Jeannie Backer - Merged Janet Barret's changes to handle SignedInteger
		* imports. Brought code closer to coding standards.
		* @history 2015-06-02 Kristin Berry - Added error for use of
		* unsupported BIP
		* organization.
		*
		*/