Commit 71c86c57 authored by David Goz's avatar David Goz 😴
Browse files

sbatch pleadi serial added

parent 2487fe8b

.gitignore

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@@ -2,3 +2,5 @@ 
*.txt

*~

*.bin

*.err

*.out
 
 No newline at end of file

jacobi/serial/not_opt/Makefile

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@@ -60,3 +60,4 @@ clean: 
	rm -f cachegrind.out.*

	rm -f callgrind.*

	rm -f *bin

	rm -rf jacobi_serial_*

jacobi/serial/not_opt/script/input_parameters

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##########################################################################

####################### paramfile ########################################



# set the template of the paramfile

TEMPLATE="paramfile_template.txt"

# set the name of the paramfile used for each run

PARAMFILE="paramfile_JUWELS.txt"

# set the grid size



##########################################################################

####################### run parameters ###################################



# Delete output files (Yes if 1)

DELETE_OUTPUT_FILES=0

# Output directory

OUTPUTDIR="./TEST/"

# number of particles

N=(65536)

# MPI tasks

MPI=(1 2)

# OMP threads

THREADS=(1 2 4)

GRID_SIZE_X=128

GRID_SIZE_Y=128



##########################################################################

jacobi/serial/not_opt/script/run_pleiadi.sh

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#!/bin/bash



######################### RESOURSE ALLOCATION #####################################

##SBATCH --account=????????



#SBATCH --partition=pleiadi

#SBATCH --job-name="Jabobi"

#SBATCH --nodes=1

#SBATCH --ntasks-per-node=1

#SBATCH --cpus-per-task=1

#SBATCH --output=Jacobi-serial-no-opt-%j.out

#SBATCH --error=Jacobi-serial-no-opt.%j.err

#SBATCH --time=00:03:00

###################################################################################



################################## MODULES ########################################

export MODULE_VERSION=5.0.1

source /opt/cluster/spack/share/spack/setup-env.sh



# module purge

module purge

# load GCC

module load default-gcc-11.2.0

###################################################################################



# input parameters

source input_parameters



WORKDIR=${PWD}

# compile the application

cd .. && make serial

if [[ "$?" != "0" ]]

then

    echo "Cannot compile the application ...aborting..."

    exit 1

fi



# get the executable

EXEC=$(find $(realpath ./) -maxdepth 1 -executable -name "jacobi_*" -type f -print)

if [[ "$?" != "0" ]]

then

    echo "Cannot find the executable ...aborting..."

    exit 2

fi





# run 

time ${EXEC} ${GRID_SIZE_X} ${GRID_SIZE_Y} |& tee ${EXEC}_output.txt



cd ${WORKDIR}



exit 0



# # return to ./script and source input parameters and function

# cd - && source input_parameters && source write_paramfile.sh



# # loop over particles

# for PART in "${N[@]}"

# do

#     # loop over MPI tasks

#     for TASK in "${MPI[@]}"

#     do

# 	# loop over OMP threads

# 	for THR in "${THREADS[@]}"

# 	do

# 	    # write the paramfile

# 	    write_paramfile ${TEMPLATE}      ${PARAMFILE}       \

# 			    ${DELETE_OUTPUT_FILES} ${OUTPUTDIR} \

# 			    ${THR} ${PART}



# 	    # check the status

# 	    if [[ "$?" != "0" ]]

# 	    then

# 		echo "Error while writing ${PARAMFILE} ...aborting..."

# 		exit 3

# 	    fi



# 	    # move the paramfile and move to the parent directory where the executable resides

# 	    mv ${PARAMFILE} ../ && cd ..

	    

# 	    # run the application

# 	    srun --ntasks ${TASK} ${EXEC} ${PARAMFILE} >& $SLURM_JOB_ID.log



# 	    # check exit status

# 	    if [[ "$?" != "0" ]]

# 	    then

# 		echo "####################################################################"

# 		echo "ERROR while running the app using: ${TASK} MPI tasks and ${GPU} GPUs"

# 		echo "####################################################################"

# 	    fi



# 	    # delete the paramfile and return to the previous directory

# 	    rm -f ${PARAMFILE} && cd -

# 	done # loop over THR

#     done # loop over TASKS

# done # looop over particles



# # make clean

# cd .. && make clean







# Everything is OK!

# exit 0