Commit 0ac85ae2 authored by David Goz's avatar David Goz 😴
Browse files

serial/openmp jabobi for hpc_school

parent 32f8a973

jacobi/openmp/not_opt/script/run_pleiadi.sh→jacobi/openmp/not_opt/script/run.sh

+14 −4
Original line number Diff line number Diff line 
#!/bin/bash



######################### RESOURSE ALLOCATION #####################################

##SBATCH --account=????????



#SBATCH --partition=pleiadi

#SBATCH --account=hpc_school

#SBATCH --partition=hpc_school

#SBATCH --job-name="Jacobi"

#SBATCH --nodes=1

#SBATCH --ntasks-per-node=1

#SBATCH --cpus-per-task=8

#SBATCH --output=Jacobi-omp-no-opt-%j.out

#SBATCH --error=Jacobi-omp-no-opt.%j.err

#SBATCH --time=00:03:00

#SBATCH --time=00:05:00

###################################################################################



################################## MODULES ########################################
@@ -43,8 +42,19 @@ then 
    exit 2

fi





# OMP stuff

export OMP_DISPLAY_AFFINITY=1

export OMP_WAIT_POLICY=ACTIVE

# export OMP_PLACES=( "cores", "threads" )

# export BINDING=( "master" "close" "spread" )



for OMP in ${OMP_THREADS[@]}

do

    # not necessary because the clause 'num_threads'

    # is specified in the source code

    # export OMP_NUM_THREADS=${OMP}



    # run the application

    time ${EXEC} ${GRID_SIZE_X} ${GRID_SIZE_Y} ${OMP} |& tee ${EXEC}_OMP_${OMP}_output.txt

done

jacobi/serial/not_opt/script/run_pleiadi.sh→jacobi/serial/not_opt/script/run.sh

+52 −0
Original line number Diff line number Diff line 
#!/bin/bash



######################### RESOURSE ALLOCATION #####################################

##SBATCH --account=????????



#SBATCH --partition=pleiadi

#SBATCH --account=hpc_school

#SBATCH --partition=hpc_school

#SBATCH --job-name="Jacobi"

#SBATCH --nodes=1

#SBATCH --ntasks-per-node=1

#SBATCH --cpus-per-task=1

#SBATCH --output=Jacobi-serial-no-opt-%j.out

#SBATCH --error=Jacobi-serial-no-opt.%j.err

#SBATCH --time=00:03:00

#SBATCH --time=00:05:00

###################################################################################



################################## MODULES ########################################
@@ -21,6 +19,8 @@ source /opt/cluster/spack/share/spack/setup-env.sh 
module purge

# load GCC

module load default-gcc-11.2.0

# load valgrind (optional)

module load valgrind-3.18.1-gcc-11.2.0-3hcfkwk

###################################################################################



# input parameters
@@ -50,55 +50,3 @@ time ${EXEC} ${GRID_SIZE_X} ${GRID_SIZE_Y} |& tee ${EXEC}_output.txt 
cd ${WORKDIR}



exit 0
 


# # return to ./script and source input parameters and function

# cd - && source input_parameters && source write_paramfile.sh



# # loop over particles

# for PART in "${N[@]}"

# do

#     # loop over MPI tasks

#     for TASK in "${MPI[@]}"

#     do

# 	# loop over OMP threads

# 	for THR in "${THREADS[@]}"

# 	do

# 	    # write the paramfile

# 	    write_paramfile ${TEMPLATE}      ${PARAMFILE}       \

# 			    ${DELETE_OUTPUT_FILES} ${OUTPUTDIR} \

# 			    ${THR} ${PART}



# 	    # check the status

# 	    if [[ "$?" != "0" ]]

# 	    then

# 		echo "Error while writing ${PARAMFILE} ...aborting..."

# 		exit 3

# 	    fi



# 	    # move the paramfile and move to the parent directory where the executable resides

# 	    mv ${PARAMFILE} ../ && cd ..

	    

# 	    # run the application

# 	    srun --ntasks ${TASK} ${EXEC} ${PARAMFILE} >& $SLURM_JOB_ID.log



# 	    # check exit status

# 	    if [[ "$?" != "0" ]]

# 	    then

# 		echo "####################################################################"

# 		echo "ERROR while running the app using: ${TASK} MPI tasks and ${GPU} GPUs"

# 		echo "####################################################################"

# 	    fi



# 	    # delete the paramfile and return to the previous directory

# 	    rm -f ${PARAMFILE} && cd -

# 	done # loop over THR

#     done # loop over TASKS

# done # looop over particles



# # make clean

# cd .. && make clean







# Everything is OK!

# exit 0