fix clone script

#!/bin/bash

set -vex

REPOS=(gitlab-profile core io integrate octree domain PM)

SESSION_NAME=how

REPOS=(${REPOS:=gitlab-profile core io integrate octree domain PM})

: ${SESSION_NAME:=hw}

while getopts "csapt" opt

while getopts "cptlr:" opt

do

   case "$opt" in

      c ) clona=1 ;;

      s ) tmuxa=1 ;;

      a ) attaccha=1 ;;

      p ) installa=1 ;;

      t ) testa=1 ;;

      p ) pyinsta=1 ;;

      t ) tmuxa=1 ;;

      l ) linka=1 ;;

      r ) shift $(( OPTIND - 2 )) && REPOS=($@) && break

   esac

done

if [ -z "$clona" ] && [ -z "$tmuxa" ] && [ -z "$attaccha" ];then

    echo 'usage: ./cloneall.bash -c (clone repos) -p (pip install) -t (python tests) -s (create screen tmux session) -a (attach to tmux)'

if [ -z "$clona" ] && [ -z "$pyinsta" ] && [ -z "$tmuxa" ] && [ -z "$linka" ];then

    echo 'usage: ./cloneall.bash -c (clone repos) -p (python install and tests) -t (attach to tmux) -l (full tree of links) -r (repos)'

    exit 1

fi

for REPO in "${REPOS[@]}"; do

    echo [ $REPO ]

done

#exit 0

if [ ! -z "$clona" ]; then

    [[ ! -d "venv" ]] && python3 -mvenv venv

    . venv/bin/activate

        pushd $REPO

        git switch dev || echo no dev branch

	if [[ "$REPO" != "gitlab-profile" ]]; then

	    [ ! -z "$installa" ] && python -mpip install -e .

	    [ ! -z "$testa" ] && python -m hotwheels.checkup hotwheels/

	    [ ! -z "$pyinsta" ] && python -mpip install -e . && python -m hotwheels.checkup hotwheels/

	fi

        popd

    done

fi

if [ ! -z "$linka" ]; then

    mkdir -p full/hotwheels

    touch full/hotwheels/__init__.py || echo cant touch

    for f in core/hotwheels/*; do

	[[ "${f##*/:0:2}" == "__" ]] && continue

	ln -sf $PWD/$f full/hotwheels/${f##*/}

    done

    for REPO in "${REPOS[@]}"; do

	if [ "$REPO" != "core" ] && [ "$REPO" != "gitlab-profile" ]; then

	    ln -sf $PWD/$REPO/hotwheels/$REPO full/hotwheels/$REPO

	fi

    done

fi

if [ ! -z "$tmuxa" ]; then

    if ! tmux has-session -t $SESSION_NAME ; then

	# Create a new tmux session

	tmux new-session -d -s $SESSION_NAME -c $PWD

	[[ -d full ]] && REPOS+=(full)

	for index in "${!REPOS[@]}"; do

            value="${REPOS[index]}"

            tmux new-window -t $SESSION_NAME -c $PWD

	done

    fi

fi

if [ ! -z "$attaccha" ]; then

    tmux attach-session -t $SESSION_NAME

fi