adjusted stare mode (hopefully) (e3bcb904) · Commits · GUIBRUSHR / DataReductionGIANOB

DataReductionGIANOB/gofio_gui.py

+17 −38

Original line number	Diff line number	Diff line
		@@ -24,55 +24,34 @@ if stare:
		single = "--single --forced_sky"
		else:
		single = ""
		if os.path.exists(folder_gofio + os.sep + "raw" + os.sep + night + os.sep):
		execute1 = "cd " + folder_gofio
		execute2b = "python gofioDRS.py " + night + " --flat --only_calib " + single
		execute2a = "python gofioDRS.py " + night + " --dark --only_calib " + single
		execute2c = "python gofioDRS.py " + night + " --une --only_calib " + single
		execute3 = "python gofioDRS.py --use_flat=" + str(flat) + " " + night + " " + single
		execute4 = "mkdir -p " + folder_output_complete
		if os.path.exists(f"{folder_gofio}{os.sep}raw{os.sep}{night}{os.sep}"):
		execute1 = f"cd {folder_gofio}"
		execute2b = f"python gofioDRS.py {night} --flat --only_calib {single}"
		execute2a = f"python gofioDRS.py {night} --dark --only_calib {single}"
		execute2c = f"python gofioDRS.py {night} --une --only_calib {single}"
		execute3 = f"python gofioDRS.py {night} --use_flat={flat} {single}"
		execute4 = f"mkdir -p {folder_output_complete}"
		if stare:
		execute5 = (
		"cp "
		+ str(Path(folder_gofio, "reduced", night, "offline")) + os.sep + "*_C_ms1d.fits "
		+ folder_output_complete
		f"cp {Path(folder_gofio, 'reduced', night, 'offline')}{os.sep}*_C_ms1d.fits "
		f"{folder_output_complete}"
		)
		execute6 = (
		"echo only_C_files"
		)
		else:
		execute5 = (
		"cp "
		+ str(Path(folder_gofio, "reduced", night, "offline")) + os.sep + "*_A_ms1d.fits "
		+ folder_output_complete
		f"cp {Path(folder_gofio, 'reduced', night, 'offline')}{os.sep}*_A_ms1d.fits "
		f"{folder_output_complete}"
		)
		execute6 = (
		"cp "
		+ str(Path(folder_gofio, "reduced", night, "offline")) + os.sep + "*_B_ms1d.fits "
		+ folder_output_complete
		f"cp {Path(folder_gofio, 'reduced', night, 'offline')}{os.sep}*_B_ms1d.fits "
		f"{folder_output_complete}"
		)

		execute7 = f'cp $(ls -t {str(Path(folder_gofio, "reduced", night, "offline", "CALIB", "*UNE_ext.fits"))} \| head -1) {str(Path(folder_output, night_reduce, "UNE_lines.fits"))}'

		execute = (
		execute1
		+ "; "
		+ execute2a
		+ "; "
		+ execute2b
		+ "; "
		+ execute2c
		+ '; echo "END CALIBRATION"; '
		+ execute3
		+ "; "
		+ execute4
		+ "; "
		+ execute5
		+ "; "
		+ execute6
		+ "; "
		+ execute7
		)
		execute = f'{execute1}; {execute2a}; {execute2b}; {execute2c}; echo "END CALIBRATION"; {execute3}; {execute4}; {execute5}; {execute6}; {execute7}'
		print(execute)
		os.system(execute)

		@@ -89,13 +68,13 @@ if os.path.exists(folder_gofio + os.sep + "raw" + os.sep + night + os.sep):
		elem2 = copy.copy(elem)
		new_str = elem2.replace("_A_ms1d.fits", "_B_ms1d.fits")
		if new_str not in list_file_B:
		os.system("rm -f %s" % elem)
		os.system(f"rm -f {elem}")
		elif len(list_file_B) > len(list_file_A):
		for elem in list_file_B:
		elem2 = copy.copy(elem)
		new_str = elem2.replace("_B_ms1d.fits", "_A_ms1d.fits")
		if new_str not in list_file_A:
		os.system("rm -f %s" % elem)
		os.system(f"rm -f {elem}")

		#
		# # DB CONNECTION
		@@ -103,4 +82,4 @@ if os.path.exists(folder_gofio + os.sep + "raw" + os.sep + night + os.sep):
		# DB.insert_target_nights(target, night_reduce, 2 * len(list_file_A), flat)
		# DB.close()
		else:
		print(folder_gofio + os.sep + "raw" + os.sep + night + os.sep + "Night is not present")
		print(f"{folder_gofio}{os.sep}raw{os.sep}{night}{os.sep}Night is not present")