Loading src/scripts/model_maker.py +22 −20 Original line number Diff line number Diff line Loading @@ -168,6 +168,7 @@ def load_model(model_file): print("ERROR: declared array of optical constants does not match configurations!") return (None, None) else: if (sconf['idfc'] == 0): sconf['dielec_id'] = [ [ 0 for j in range(max_layers)] for i in range(sconf['configurations']) ] Loading Loading @@ -203,7 +204,7 @@ def load_model(model_file): for di in range(max_layers): for dj in range(sconf['configurations']): if (len(model['material_settings']['diel_const'][dj]) / 2 != sconf['nshl'][dj]): print("ERROR: dielectric constants for type %dj do not match number of layers!"%(dj + 1)) print("ERROR: dielectric constants for type %d do not match number of layers!"%(dj + 1)) return (None, None) else: sconf['rdc0'][di][dj][0] = float(model['material_settings']['diel_const'][dj][2 * di]) Loading Loading @@ -289,6 +290,7 @@ def load_model(model_file): gconf['inpol'] = 0 if str_polar == "LINEAR" else 1 gconf['npnt'] = int(model['geometry_settings']['npnt']) gconf['npntts'] = int(model['geometry_settings']['npntts']) if (gconf['application'] != "SPHERE"): gconf['iavm'] = int(model['geometry_settings']['iavm']) gconf['isam'] = int(model['geometry_settings']['isam']) gconf['jwtm'] = int(model['output_settings']['jwtm']) Loading @@ -304,6 +306,9 @@ def load_model(model_file): gconf['phs'] = float(model['geometry_settings']['sc_ph_start']) gconf['phsstp'] = float(model['geometry_settings']['sc_ph_step']) gconf['phslst'] = float(model['geometry_settings']['sc_ph_end']) gconf['vec_sph_x'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_y'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_z'] = [0.0 for i in range(gconf['nsph'])] if (gconf['application'] != "SPHERE" or gconf['nsph'] != 1): # TODO: put here a test to allow for empty vectors in case of random generation if (len(model['geometry_settings']['x_coords']) != gconf['nsph']): Loading @@ -315,9 +320,6 @@ def load_model(model_file): if (len(model['geometry_settings']['z_coords']) != gconf['nsph']): print("ERROR: Z coordinates do not match the number of spheres!") return (None, None) gconf['vec_sph_x'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_y'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_z'] = [0.0 for i in range(gconf['nsph'])] for si in range(gconf['nsph']): gconf['vec_sph_x'][si] = float(model['geometry_settings']['x_coords'][si]) gconf['vec_sph_y'][si] = float(model['geometry_settings']['y_coords'][si]) Loading Loading @@ -507,7 +509,7 @@ def write_legacy_sconf(conf): output = open(out_file, 'w') str_line = " {0:3d}{1:3d}\n".format(nsph, ies) output.write(str_line) str_line = " {0:12.7E} {1:12.7E} {2:12.7E} {3:2d} {4:7d} {5:4d} {6:3d}\n".format( str_line = " {0:12.7E} {1:12.7E} {2:12.7E} {3:2d} {4:4d} {5:4d} {6:3d}\n".format( exdc, wp, xip, idfc, nxi, instpc, xi_flag ) output.write(str_line) Loading test_data/cluster/config_dev.yml 0 → 100644 +146 −0 Original line number Diff line number Diff line system_settings: # Limit on host RAM use in Gb (0 for no configuration limit) max_host_ram : 0 # Limit on GPU RAM use in Gb ( 0 for no configuration limit) max_gpu_ram : 0 input_settings: # Folder to write the code input configuration files input_folder : "." # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DCLU" output_settings: # Folder for the code output storage output_folder: "test_subdir" # Name of the main output file output_name : "c_OCLU" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output jwtm : 1 particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "CLUSTER" # Number of spheres n_spheres : 4 # Number of sphere types n_types : 4 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1, 2, 3, 4 ] # Vector of layers in types (how many layers in each type) n_layers : [ 1, 1, 1, 1 ] # Spherical monomer radii in m (one size for each type) radii : [ 5.0e-8, 4.0e-8, 7.5e-8, 3.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 1.0 ], [ 1.0 ], [ 1.0 ], [ 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ [ 1 ], [ 1 ], [ 1 ], [ 1 ] ] material_settings: diel_flag : -1 # External medium dielectric constant extern_diel : 2.3104e0 # Dielectric constant files folder dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e00 # Last scale to be used scale_end : 2.0e00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 1.0e00 # Peak Omega wp : 1.372e15 # Peak scale xip : 1.0e00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 8 # Maximum external field expansion (not used by SPHERE) le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points npntts : 300 # Averaging mode iavm : 0 # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [ 0.00e00, 0.00e00, 1.18882e-07, -5.656855e-08, ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [ 3.00e-08, 3.00e-08, 3.00e-08, -2.656855e-08 ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [ 0.00e00, 9.00e-08, 3.8627e-08, 0.00e00 ] test_data/config_example.yml +64 −41 Original line number Diff line number Diff line Loading @@ -10,13 +10,13 @@ input_settings: # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DSPH" geometry_file: "DCLU" output_settings: # Folder for the code output storage output_folder: "test_subdir" # Name of the main output file output_name : "c_OSPH" output_name : "c_OCLU" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output Loading @@ -24,64 +24,73 @@ output_settings: particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "SPHERE" application : "CLUSTER" # Number of spheres n_spheres : 1 n_spheres : 4 # Number of sphere types n_types : 1 n_types : 4 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1 ] sph_types : [ 1, 2, 3, 4 ] # Vector of layers in types (how many layers in each type) n_layers : [ 2 ] n_layers : [ 1, 1, 1, 1 ] # Spherical monomer radii in m (one size for each type) radii : [ 2.5e-7 ] radii : [ 5.0e-8, 4.0e-8, 7.5e-8, 3.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 0.5, 1.0 ] ] rad_frac : [ [ 1.0 ], [ 1.0 ], [ 1.0 ], [ 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ [ 1, 2 ] ] dielec_id : [ [ 1 ], [ 1 ], [ 1 ], [ 1 ] ] material_settings: diel_flag : 0 diel_flag : -1 # External medium dielectric constant extern_diel : 1.0e0 extern_diel : 2.3104e0 # Dielectric constant files folder dielec_path : "../" # List of dielectric constant files dielec_file : [ "eps_draine_long_Si", "eps_ashok_long_C" ] dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # interpolate: the constants are interpolated on wavelengths # grid: only the wavelengths with defined constants are computed # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e-7 scale_start : 1.0e00 # Last scale to be used scale_end : 1.0e-6 scale_end : 2.0e00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 5.0e-9 scale_step : 1.0e00 # Peak Omega wp : 3.0e8 wp : 1.372e15 # Peak scale xip : 1.0e0 xip : 1.0e00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable (only wavelength supported, for now) scale_name : "WAVELENGTH" # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 20 li : 8 # Maximum external field expansion (not used by SPHERE) le : 20 le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points Loading @@ -91,33 +100,47 @@ geometry_settings: # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 0.0 in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 0.0 in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 0.0 in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 0.0 in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 0.0 in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 0.0 sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 0.0 sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 0.0 sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 0.0 sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 0.0 sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 0.0 sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [] x_coords : [ 0.00e00, 0.00e00, 1.18882e-07, -5.656855e-08, ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [] y_coords : [ 3.00e-08, 3.00e-08, 3.00e-08, -2.656855e-08 ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [] No newline at end of file z_coords : [ 0.00e00, 9.00e-08, 3.8627e-08, 0.00e00 ] test_data/sphere/config_dev.yml 0 → 100644 +126 −0 Original line number Diff line number Diff line system_settings: # Limit on host RAM use in Gb (0 for no configuration limit) max_host_ram : 0 # Limit on GPU RAM use in Gb ( 0 for no configuration limit) max_gpu_ram : 0 input_settings: # Folder to write the code input configuration files input_folder : "." # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DSPH" output_settings: # Folder for the code output storage output_folder: "." # Name of the main output file output_name : "c_OSPH" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output jwtm : 1 particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "SPHERE" # Number of spheres n_spheres : 1 # Number of sphere types n_types : 1 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1 ] # Vector of layers in types (how many layers in each type) n_layers : [ 2 ] # Spherical monomer radii in m (one size for each type) radii : [ 4.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 0.75, 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ ] material_settings: diel_flag : -1 # External medium dielectric constant extern_diel : 1.7689e+00 # Dielectric constant files folder dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 2.25e00, 2.56e-03, 2.25e00, 2.56e-03 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e+00 # Last scale to be used scale_end : 2.0e+00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 1.0e+00 # Peak Omega wp : 1.7715748e+15 # Peak scale xip : 1.0e+00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 8 # Maximum external field expansion (not used by SPHERE) le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points npntts : 300 # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [ ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [ ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [ ] Loading
src/scripts/model_maker.py +22 −20 Original line number Diff line number Diff line Loading @@ -168,6 +168,7 @@ def load_model(model_file): print("ERROR: declared array of optical constants does not match configurations!") return (None, None) else: if (sconf['idfc'] == 0): sconf['dielec_id'] = [ [ 0 for j in range(max_layers)] for i in range(sconf['configurations']) ] Loading Loading @@ -203,7 +204,7 @@ def load_model(model_file): for di in range(max_layers): for dj in range(sconf['configurations']): if (len(model['material_settings']['diel_const'][dj]) / 2 != sconf['nshl'][dj]): print("ERROR: dielectric constants for type %dj do not match number of layers!"%(dj + 1)) print("ERROR: dielectric constants for type %d do not match number of layers!"%(dj + 1)) return (None, None) else: sconf['rdc0'][di][dj][0] = float(model['material_settings']['diel_const'][dj][2 * di]) Loading Loading @@ -289,6 +290,7 @@ def load_model(model_file): gconf['inpol'] = 0 if str_polar == "LINEAR" else 1 gconf['npnt'] = int(model['geometry_settings']['npnt']) gconf['npntts'] = int(model['geometry_settings']['npntts']) if (gconf['application'] != "SPHERE"): gconf['iavm'] = int(model['geometry_settings']['iavm']) gconf['isam'] = int(model['geometry_settings']['isam']) gconf['jwtm'] = int(model['output_settings']['jwtm']) Loading @@ -304,6 +306,9 @@ def load_model(model_file): gconf['phs'] = float(model['geometry_settings']['sc_ph_start']) gconf['phsstp'] = float(model['geometry_settings']['sc_ph_step']) gconf['phslst'] = float(model['geometry_settings']['sc_ph_end']) gconf['vec_sph_x'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_y'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_z'] = [0.0 for i in range(gconf['nsph'])] if (gconf['application'] != "SPHERE" or gconf['nsph'] != 1): # TODO: put here a test to allow for empty vectors in case of random generation if (len(model['geometry_settings']['x_coords']) != gconf['nsph']): Loading @@ -315,9 +320,6 @@ def load_model(model_file): if (len(model['geometry_settings']['z_coords']) != gconf['nsph']): print("ERROR: Z coordinates do not match the number of spheres!") return (None, None) gconf['vec_sph_x'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_y'] = [0.0 for i in range(gconf['nsph'])] gconf['vec_sph_z'] = [0.0 for i in range(gconf['nsph'])] for si in range(gconf['nsph']): gconf['vec_sph_x'][si] = float(model['geometry_settings']['x_coords'][si]) gconf['vec_sph_y'][si] = float(model['geometry_settings']['y_coords'][si]) Loading Loading @@ -507,7 +509,7 @@ def write_legacy_sconf(conf): output = open(out_file, 'w') str_line = " {0:3d}{1:3d}\n".format(nsph, ies) output.write(str_line) str_line = " {0:12.7E} {1:12.7E} {2:12.7E} {3:2d} {4:7d} {5:4d} {6:3d}\n".format( str_line = " {0:12.7E} {1:12.7E} {2:12.7E} {3:2d} {4:4d} {5:4d} {6:3d}\n".format( exdc, wp, xip, idfc, nxi, instpc, xi_flag ) output.write(str_line) Loading
test_data/cluster/config_dev.yml 0 → 100644 +146 −0 Original line number Diff line number Diff line system_settings: # Limit on host RAM use in Gb (0 for no configuration limit) max_host_ram : 0 # Limit on GPU RAM use in Gb ( 0 for no configuration limit) max_gpu_ram : 0 input_settings: # Folder to write the code input configuration files input_folder : "." # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DCLU" output_settings: # Folder for the code output storage output_folder: "test_subdir" # Name of the main output file output_name : "c_OCLU" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output jwtm : 1 particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "CLUSTER" # Number of spheres n_spheres : 4 # Number of sphere types n_types : 4 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1, 2, 3, 4 ] # Vector of layers in types (how many layers in each type) n_layers : [ 1, 1, 1, 1 ] # Spherical monomer radii in m (one size for each type) radii : [ 5.0e-8, 4.0e-8, 7.5e-8, 3.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 1.0 ], [ 1.0 ], [ 1.0 ], [ 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ [ 1 ], [ 1 ], [ 1 ], [ 1 ] ] material_settings: diel_flag : -1 # External medium dielectric constant extern_diel : 2.3104e0 # Dielectric constant files folder dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e00 # Last scale to be used scale_end : 2.0e00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 1.0e00 # Peak Omega wp : 1.372e15 # Peak scale xip : 1.0e00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 8 # Maximum external field expansion (not used by SPHERE) le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points npntts : 300 # Averaging mode iavm : 0 # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [ 0.00e00, 0.00e00, 1.18882e-07, -5.656855e-08, ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [ 3.00e-08, 3.00e-08, 3.00e-08, -2.656855e-08 ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [ 0.00e00, 9.00e-08, 3.8627e-08, 0.00e00 ]
test_data/config_example.yml +64 −41 Original line number Diff line number Diff line Loading @@ -10,13 +10,13 @@ input_settings: # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DSPH" geometry_file: "DCLU" output_settings: # Folder for the code output storage output_folder: "test_subdir" # Name of the main output file output_name : "c_OSPH" output_name : "c_OCLU" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output Loading @@ -24,64 +24,73 @@ output_settings: particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "SPHERE" application : "CLUSTER" # Number of spheres n_spheres : 1 n_spheres : 4 # Number of sphere types n_types : 1 n_types : 4 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1 ] sph_types : [ 1, 2, 3, 4 ] # Vector of layers in types (how many layers in each type) n_layers : [ 2 ] n_layers : [ 1, 1, 1, 1 ] # Spherical monomer radii in m (one size for each type) radii : [ 2.5e-7 ] radii : [ 5.0e-8, 4.0e-8, 7.5e-8, 3.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 0.5, 1.0 ] ] rad_frac : [ [ 1.0 ], [ 1.0 ], [ 1.0 ], [ 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ [ 1, 2 ] ] dielec_id : [ [ 1 ], [ 1 ], [ 1 ], [ 1 ] ] material_settings: diel_flag : 0 diel_flag : -1 # External medium dielectric constant extern_diel : 1.0e0 extern_diel : 2.3104e0 # Dielectric constant files folder dielec_path : "../" # List of dielectric constant files dielec_file : [ "eps_draine_long_Si", "eps_ashok_long_C" ] dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # interpolate: the constants are interpolated on wavelengths # grid: only the wavelengths with defined constants are computed # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ], [ 3.25e00, 0.00e00 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e-7 scale_start : 1.0e00 # Last scale to be used scale_end : 1.0e-6 scale_end : 2.0e00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 5.0e-9 scale_step : 1.0e00 # Peak Omega wp : 3.0e8 wp : 1.372e15 # Peak scale xip : 1.0e0 xip : 1.0e00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable (only wavelength supported, for now) scale_name : "WAVELENGTH" # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 20 li : 8 # Maximum external field expansion (not used by SPHERE) le : 20 le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points Loading @@ -91,33 +100,47 @@ geometry_settings: # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 0.0 in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 0.0 in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 0.0 in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 0.0 in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 0.0 in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 0.0 sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 0.0 sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 0.0 sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 0.0 sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 0.0 sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 0.0 sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [] x_coords : [ 0.00e00, 0.00e00, 1.18882e-07, -5.656855e-08, ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [] y_coords : [ 3.00e-08, 3.00e-08, 3.00e-08, -2.656855e-08 ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [] No newline at end of file z_coords : [ 0.00e00, 9.00e-08, 3.8627e-08, 0.00e00 ]
test_data/sphere/config_dev.yml 0 → 100644 +126 −0 Original line number Diff line number Diff line system_settings: # Limit on host RAM use in Gb (0 for no configuration limit) max_host_ram : 0 # Limit on GPU RAM use in Gb ( 0 for no configuration limit) max_gpu_ram : 0 input_settings: # Folder to write the code input configuration files input_folder : "." # Name of the scatterer description file spheres_file : "DEDFB" # Name of the geometry description file geometry_file: "DSPH" output_settings: # Folder for the code output storage output_folder: "." # Name of the main output file output_name : "c_OSPH" # Requested output formats formats : [ "LEGACY", "HDF5" ] # Index of the scale for transition matrix output jwtm : 1 particle_settings: # What application to use (SPHERE | CLUSTER | INCLUSION) application : "SPHERE" # Number of spheres n_spheres : 1 # Number of sphere types n_types : 1 # Vector of sphere type identifiers (what type is each sphere) sph_types : [ 1 ] # Vector of layers in types (how many layers in each type) n_layers : [ 2 ] # Spherical monomer radii in m (one size for each type) radii : [ 4.0e-8 ] # Layer fractional radii (one per layer in each type) rad_frac : [ [ 0.75, 1.0 ] ] # Index of the dielectric constants (one per layer in each type) # # 1 is first file in `dielec_file`, 2 is second ... dielec_id : [ ] material_settings: diel_flag : -1 # External medium dielectric constant extern_diel : 1.7689e+00 # Dielectric constant files folder dielec_path : "." # List of dielectric constant files (used if diel_flag = 0) dielec_file : [ ] # Dielectric constant files format (same for all files) dielec_fmt : [ "CSV" ] # Matching method between optical constants and radiation wavelengths # # INTERPOLATE: the constants are interpolated on wavelengths # GRID: only the wavelengths with defined constants are computed # match_mode : "GRID" # Reference dielectric constants (used if diel_flag = -1) # # One real and one imaginary part for each layer in each type. diel_const : [ [ 2.25e00, 2.56e-03, 2.25e00, 2.56e-03 ] ] radiation_settings: # Radiation field polarization (LINEAR | CIRCULAR) polarization: "LINEAR" # First scale to be used scale_start : 1.0e+00 # Last scale to be used scale_end : 2.0e+00 # Calculation step (overridden if `match_mode` is GRID) scale_step : 1.0e+00 # Peak Omega wp : 1.7715748e+15 # Peak scale xip : 1.0e+00 # Define scale explicitly (0) or in equal steps (1) step_flag : 0 # Type of scaling variable scale_name : "XI" geometry_settings: # Maximum internal field expansion li : 8 # Maximum external field expansion (not used by SPHERE) le : 8 # Number of transition layer integration points npnt : 149 # Number of non transition layer integration points npntts : 300 # Meridional plane flag isam : 0 # Starting incidence azimuth angle in_th_start : 79.0 # Incidence azimuth angle incremental step in_th_step : 10.0 # Ending incidence azimuth angle in_th_end : 89.0 # Starting incidence elevation angle in_ph_start : 0.0 # Incidence elevation angle incremental step in_ph_step : 10.0 # Ending incidence elevation angle in_ph_end : 10.0 # Starting scattered azimuth angle sc_th_start : 34.0 # Scattered azimuth angle incremental step sc_th_step : 15.0 # Ending scattered azimuth angle sc_th_end : 49.0 # Starting scattered elevation angle sc_ph_start : 5.0 # Scattered elevation angle incremental step sc_ph_step : 5.0 # Ending scattered elevation angle sc_ph_end : 10.0 # Vector of sphere X coordinates (one per sphere or empty for random) x_coords : [ ] # Vector of sphere Y coordinates (one per sphere or empty for random) y_coords : [ ] # Vector of sphere Z coordinates (one per sphere or empty for random) z_coords : [ ]
