Commit a9938791 authored by Giovanni La Mura's avatar Giovanni La Mura
Browse files

Merge branch 'master' into script_devel to align with M10a.02

parents 482fc3dc c8b6ff9b

.gitlab-ci.yml

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default:

   image: gmulas/np-tmcode

   #image: debian:trixie



# Switch from branch pipelines to merge request pipelines when a merge request is created

workflow:

README.md

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# License



   Copyright (C) 2024   INAF - Osservatorio Astronomico di Cagliari

   Copyright (C) 2025   INAF - Osservatorio Astronomico di Cagliari



   This program is free software: you can redistribute it and/or modify

   it under the terms of the GNU General Public License as published by

build/README.md

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@@ -115,7 +115,7 @@ where the arguments must be valid paths to binary transition matrix files saved 


# License



   Copyright (C) 2024   INAF - Osservatorio Astronomico di Cagliari

   Copyright (C) 2025   INAF - Osservatorio Astronomico di Cagliari



   This program is free software: you can redistribute it and/or modify

   it under the terms of the GNU General Public License as published by

containers/docker/Dockerfile

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@@ -57,19 +57,19 @@ ADD doc /root/np-tmcode/doc 
ADD build /root/np-tmcode/build

ADD test_data /root/np-tmcode/test_data

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_MAGMA=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_MAGMA=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_magma_mpi

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --with-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_magma_mpi && mv sphere/np_sphere sphere/np_sphere_magma_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_magma_mpi && mv trapping/np_trapping trapping/np_trapping_magma_mpi

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --with-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_magma_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_magma_mpi 

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_MAGMA=1 USE_OPENMP=1 CXX=g++ FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_MAGMA=1 USE_OPENMP=1 CXX=g++ FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_magma_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --with-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_magma_serial && mv sphere/np_sphere sphere/np_sphere_magma_serial && mv inclusion/np_inclusion inclusion/np_inclusion_magma_serial && mv trapping/np_trapping trapping/np_trapping_magma_serial

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --with-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_cublas_mpi && mv sphere/np_sphere sphere/np_sphere_cublas_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_cublas_mpi && mv trapping/np_trapping trapping/np_trapping_cublas_mpi

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --with-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_cublas_serial && mv sphere/np_sphere sphere/np_sphere_cublas_serial && mv inclusion/np_inclusion inclusion/np_inclusion_cublas_serial && mv trapping/np_trapping trapping/np_trapping_cublas_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --with-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_magma_serial && mv inclusion/np_inclusion inclusion/np_inclusion_magma_serial 

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --with-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_cublas_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_cublas_mpi 

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --with-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_cublas_serial && mv inclusion/np_inclusion inclusion/np_inclusion_cublas_serial 

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_lapack_mpi && cd ../build/cluster && ln -s np_cluster_lapack_mpi np_cluster

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_lapack_mpi && mv sphere/np_sphere sphere/np_sphere_lapack_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_lapack_mpi && mv trapping/np_trapping trapping/np_trapping_lapack_mpi && cd cluster && ln -s np_cluster_lapack_mpi np_cluster && cd ../sphere && ln -s np_sphere_lapack_mpi np_sphere && cd ../inclusion && ln -s np_inclusion_lapack_mpi np_inclusion && cd ../trapping && ln -s np_trapping_lapack_mpi np_trapping   

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_lapack_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_lapack_mpi && mv trapping/np_trapping trapping/np_trapping_lapack_mpi && cd cluster && ln -s np_cluster_lapack_mpi np_cluster && cd ../inclusion && ln -s np_inclusion_lapack_mpi np_inclusion 

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_OPENMP=1 CXX=g++ FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_LAPACK=1 USE_OPENMP=1 CXX=g++ FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_lapack_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_lapack_serial && mv sphere/np_sphere sphere/np_sphere_lapack_serial && mv inclusion/np_inclusion inclusion/np_inclusion_lapack_serial && mv trapping/np_trapping trapping/np_trapping_lapack_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --enable-openmp --with-lapack --without-magma --enable-refinement --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_lapack_serial && mv inclusion/np_inclusion inclusion/np_inclusion_lapack_serial 

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_OPENMP=1 USE_MPI=1 CXX=mpicxx FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_legacy_mpi

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --without-lapack --without-magma --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_legacy_mpi && mv sphere/np_sphere sphere/np_sphere_legacy_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_legacy_mpi && mv trapping/np_trapping trapping/np_trapping_legacy_mpi

RUN cd np-tmcode/build && CXX=mpicxx FC=gfortran ./configure --enable-openmp --without-lapack --without-magma --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_legacy_mpi && mv sphere/np_sphere sphere/np_sphere_legacy_mpi && mv inclusion/np_inclusion inclusion/np_inclusion_legacy_mpi && cd sphere && ln -s np_sphere_legacy_mpi np_sphere

#RUN cd np-tmcode/src && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_OPENMP=1 CXX=g++ FC=gfortran make wipe && BUILDDIR=../../build BUILDDIR_NPTM=../../build/libnptm LIBNPTM=../../build/libnptm/libnptm.a USE_ILP64=1 USE_OPENMP=1 CXX=g++ FC=gfortran make -j && mv ../build/cluster/np_cluster ../build/cluster/np_cluster_legacy_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --disable-openmp --without-lapack --without-magma --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_legacy_serial && mv sphere/np_sphere sphere/np_sphere_legacy_serial && mv inclusion/np_inclusion inclusion/np_inclusion_legacy_serial && mv trapping/np_trapping trapping/np_trapping_legacy_serial

RUN cd np-tmcode/build && CXX=g++ FC=gfortran ./configure --disable-openmp --without-lapack --without-magma --without-cublas && make clean && make -j && mv cluster/np_cluster cluster/np_cluster_legacy_serial && mv sphere/np_sphere sphere/np_sphere_legacy_serial && mv inclusion/np_inclusion inclusion/np_inclusion_legacy_serial 

RUN cd np-tmcode/doc/src && doxygen config.dox && cd ../build/latex && make -j

containers/docker/README.md

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# Docker support for the NP-TMcode project



## Using the pre-built image

The current version of NP-TMcode (M8.03) has been bundled in a pre-built `docker` image, distributed via `https://hub.docker.com/`. To use this image, run the command:

The current version of NP-TMcode (M10a) has been bundled in a pre-built `docker` image, distributed via `https://hub.docker.com/`. To use this image, run the command:



   > docker run -it gmulas/np-tmcode-run:M8 /bin/bash

   > docker run -it gmulas/np-tmcode-run:m10a.00 /bin/bash



The image will be automatically downloaded, if it is not available in the system, then it will be run in interactive mode, starting a shell session. Follow the instructions provided in Sec. 3.4.1 of the Release Notes document to proceed with testing and code use.
@@ -21,7 +21,7 @@ where `<image name>` is either `np-tmcode` or `np-tmcode-run`. One may also add 


# License



   Copyright (C) 2024   INAF - Osservatorio Astronomico di Cagliari

   Copyright (C) 2025   INAF - Osservatorio Astronomico di Cagliari



   This program is free software: you can redistribute it and/or modify

   it under the terms of the GNU General Public License as published by