Loading build/Makefile.am +1 −1 Original line number Diff line number Diff line AUTOMAKE_OPTIONS=subdir-objects LDADD=libnptm/libnptm.la -L/usr/lib64 $(HDF5_LDFLAGS) LDADD=libnptm/libnptm.la -L/usr/lib64 ${HDF5_LDFLAGS} ${LAPACK_LDFLAGS} lib_LTLIBRARIES=libnptm/libnptm.la libnptm_libnptm_la_SOURCES=../src/libnptm/algebraic.cpp ../src/libnptm/clu_subs.cpp ../src/libnptm/Commons.cpp ../src/libnptm/Configuration.cpp ../src/libnptm/file_io.cpp ../src/libnptm/lapack_calls.cpp ../src/libnptm/logging.cpp ../src/libnptm/magma_calls.cpp ../src/libnptm/Parsers.cpp ../src/libnptm/sph_subs.cpp ../src/libnptm/tfrfme.cpp ../src/libnptm/TransitionMatrix.cpp ../src/libnptm/tra_subs.cpp ../src/libnptm/types.cpp bin_PROGRAMS=cluster/edfb_clu cluster/clu cluster/np_cluster sphere/edfb_sph sphere/sph sphere/np_sphere trapping/frfme trapping/lffft trapping/np_trapping Loading build/configure.ac +191 −113 Original line number Diff line number Diff line # CAPABILITY TESTING MACROS m4_define( [M4_HDF5_LIB], [cat > nptm_test_hdf5.cpp <<EOF [ cat > nptm_test_hdf5.cpp <<EOF #include <hdf5.h> int main(int argc, char **argv) { hid_t file_id = 0; Loading @@ -14,9 +15,25 @@ EOF rm nptm_test_hdf5.cpp if test "x$TEST_HDF5_LIB" = "x0"; then rm nptm_test_hdf5 fi] fi ] ) m4_define( [M4_DETECT_LAPACK], [ LAPACK_ROOT=$MKLROOT if test "x$LAPACK_ROOT" != "x"; then export LAPACK_INCLUDE=$(MKLROOT)/include export LAPACK_LIB=$(MKLROOT)/lib export LAPACK_LIBRARY="-Wl,--no-as-needed -lmkl_intel_ilp64 -lmkl_gnu_thread -lmkl_core -lgomp -lpthread -lm -ldl" else export LAPACK_INCLUDE=/usr/include export LAPACK_LIB=/lib/x86_64-linux-gnu export LAPACK_LIBRARY="-llapacke64" fi ] ) # END CAPABILITY TESTING MACROS # autoconf setup initialization Loading @@ -35,62 +52,71 @@ AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_PROG_AR AC_ARG_ENABLE( [mpi], [AS_HELP_STRING([--enable-mpi], [use MPI if available (default is yes)])], [AS_HELP_STRING([--enable-mpi], [use MPI if available [default=yes]])], [ if test "x$enableval" = "xno"; then if test "x$F77" = "xmpif90"; then gfortran --version > /dev/null if test "x$?" = "x0"; then export F77=gfortran AC_SUBST([F77], [gfortran]) fi fi if test "x$F77" = "xmpif90"; then f77 --version > /dev/null if test "x$?" = "x0"; then export F77=f77 #export F77=f77 AC_SUBST([F77], [f77]) fi fi if test "x$CXX" = "xmpicxx"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "xmpicxx"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi if test "x$F77" = "x"; then gfortran --version > /dev/null if test "x$?" = "x0"; then export F77=gfortran #export F77=gfortran AC_SUBST([F77], [gfortran]) fi fi if test "x$F77" = "x"; then f77 --version > /dev/null if test "x$?" = "x0"; then export F77=f77 #export F77=f77 AC_SUBST([F77], [f77]) fi fi if test "x$CXX" = "x"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "x"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi else mpicxx --version > /dev/null if test "x$?" = "x0"; then export CXX=mpicxx export F77=mpif90 #export CXX=mpicxx #export F77=mpif90 AC_SUBST([CXX], [mpicxx]) AC_SUBST([F77], [mpif90]) else AC_MSG_ERROR(["MPI was enabled, but no MPI compiler was found!"]) fi Loading @@ -100,28 +126,30 @@ AC_ARG_ENABLE( if test "x$CXX" = "x"; then mpicxx --version > /dev/null if test "x$?" = "x0"; then export CXX=mpicxx export F77=mpif90 #export CXX=mpicxx #export F77=mpif90 AC_SUBST([CXX], [mpicxx]) AC_SUBST([F77], [mpif90]) fi fi if test "x$CXX" = "x"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "x"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi ] ) AC_SUBST([CXX]) AC_PROG_CXX(CXX) AC_SUBST([F77]) AC_PROG_F77([$F77 mpif90 gfortran f77]) AC_PROG_CXX([$CXX]) AC_PROG_F77([$F77]) # Libtool initialization LT_INIT Loading @@ -129,17 +157,14 @@ LT_INIT # Environment setup AS_IF( [test "x$HDF5_INCLUDE" = "x"], [export HDF5_INCLUDE=/usr/include/hdf5/serial], [AC_MSG_NOTICE(["HDF5_INCLUDE=$HDF5_INCLUDE"])] [AC_SUBST([HDF5_INCLUDE], ["/usr/include/hdf5/serial"])], [AC_MSG_NOTICE([HDF5_INCLUDE=$(HDF5_INCLUDE)])] ) AS_IF( [test "x$HDF5_LIB" = "x"], [export HDF5_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial], [AC_MSG_NOTICE(["HDF5_LIB=$HDF5_LIB"])] [AC_SUBST([HDF5_LIB], ["/usr/lib/x86_64-linux-gnu/hdf5/serial"])], [AC_MSG_NOTICE([HDF5_LIB=$(HDF5_LIB)])] ) FFLAGS="-std=legacy -O3" CXXFLAGS="-O3 -ggdb -Wno-format-contains-nul -I $HDF5_INCLUDE" SUBDIRS="cluster libnptm sphere testing trapping" # Check for required headers AC_CHECK_HEADER( Loading @@ -152,12 +177,65 @@ AC_CHECK_HEADER( M4_HDF5_LIB AS_IF( [test "x$TEST_HDF5_LIB" = "x0"], [export HDF5_LDFLAGS="-L${HDF5_LIB} -lhdf5"], [AC_SUBST([HDF5_LDFLAGS], ["-L${HDF5_LIB} -lhdf5"])], [AC_MSG_ERROR(["HDF5 library not found!"])] ) AC_SUBST([HDF5_LDFLAGS]) # Configure the optional features M4_DETECT_LAPACK AS_IF( [test "x$LAPACK_LIBRARY" != "x"], [AC_MSG_NOTICE([LAPACK detected])], [AC_MSG_NOTICE([No LAPACK found])] ) AC_ARG_ENABLE( [openmp], [AS_HELP_STRING([--enable-openmp], [enable OpneMP multi-threading [default=yes]])], [ if test "x$enableval" != "xno"; then AC_SUBST([OMPFLAGS], ["-fopenmp"]) fi ], [ AC_SUBST([OMPFLAGS], ["-fopenmp"]) ] ) AC_ARG_WITH( [lapack], [AS_HELP_STRING([--with-lapack], [use LAPACK @<:@default=check@:>@])], [ if test "x$withval" = "xno"; then AC_SUBST([LAPACK_FLAGS], [""]) AC_SUBST([LAPACK_LDFLAGS], [""]) fi ], [ if test "x$LAPACK_INCLUDE" != "x"; then AC_SUBST([LAPACK_FLAGS], ["-DUSE_LAPACK -DLAPACK_ILP64 -DUSE_ILP64 -I${LAPACK_INCLUDE}"]) AC_SUBST([LAPACK_LDFLAGS], ["-L${LAPACK_LIB} ${LAPACK_LIBRARY}"]) fi ] ) AC_ARG_WITH( [magma], [AS_HELP_STRING([--with-magma], [use MAGMA @<:@default=check@:>@])], [], [] ) AC_ARG_ENABLE( [ilp64], [AS_HELP_STRING([--enable-ilp64], [use MAGMA @<:@default=check@:>@])], [], [] ) FFLAGS="-std=legacy -O3" CXXFLAGS="-O3 -ggdb -Wno-format-contains-nul -I$HDF5_INCLUDE $OMPFLAGS $LAPACK_FLAGS" SUBDIRS="cluster libnptm sphere testing trapping" # Send output to Makefiles AC_CONFIG_FILES([Makefile]) Loading Loading
build/Makefile.am +1 −1 Original line number Diff line number Diff line AUTOMAKE_OPTIONS=subdir-objects LDADD=libnptm/libnptm.la -L/usr/lib64 $(HDF5_LDFLAGS) LDADD=libnptm/libnptm.la -L/usr/lib64 ${HDF5_LDFLAGS} ${LAPACK_LDFLAGS} lib_LTLIBRARIES=libnptm/libnptm.la libnptm_libnptm_la_SOURCES=../src/libnptm/algebraic.cpp ../src/libnptm/clu_subs.cpp ../src/libnptm/Commons.cpp ../src/libnptm/Configuration.cpp ../src/libnptm/file_io.cpp ../src/libnptm/lapack_calls.cpp ../src/libnptm/logging.cpp ../src/libnptm/magma_calls.cpp ../src/libnptm/Parsers.cpp ../src/libnptm/sph_subs.cpp ../src/libnptm/tfrfme.cpp ../src/libnptm/TransitionMatrix.cpp ../src/libnptm/tra_subs.cpp ../src/libnptm/types.cpp bin_PROGRAMS=cluster/edfb_clu cluster/clu cluster/np_cluster sphere/edfb_sph sphere/sph sphere/np_sphere trapping/frfme trapping/lffft trapping/np_trapping Loading
build/configure.ac +191 −113 Original line number Diff line number Diff line # CAPABILITY TESTING MACROS m4_define( [M4_HDF5_LIB], [cat > nptm_test_hdf5.cpp <<EOF [ cat > nptm_test_hdf5.cpp <<EOF #include <hdf5.h> int main(int argc, char **argv) { hid_t file_id = 0; Loading @@ -14,9 +15,25 @@ EOF rm nptm_test_hdf5.cpp if test "x$TEST_HDF5_LIB" = "x0"; then rm nptm_test_hdf5 fi] fi ] ) m4_define( [M4_DETECT_LAPACK], [ LAPACK_ROOT=$MKLROOT if test "x$LAPACK_ROOT" != "x"; then export LAPACK_INCLUDE=$(MKLROOT)/include export LAPACK_LIB=$(MKLROOT)/lib export LAPACK_LIBRARY="-Wl,--no-as-needed -lmkl_intel_ilp64 -lmkl_gnu_thread -lmkl_core -lgomp -lpthread -lm -ldl" else export LAPACK_INCLUDE=/usr/include export LAPACK_LIB=/lib/x86_64-linux-gnu export LAPACK_LIBRARY="-llapacke64" fi ] ) # END CAPABILITY TESTING MACROS # autoconf setup initialization Loading @@ -35,62 +52,71 @@ AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_PROG_AR AC_ARG_ENABLE( [mpi], [AS_HELP_STRING([--enable-mpi], [use MPI if available (default is yes)])], [AS_HELP_STRING([--enable-mpi], [use MPI if available [default=yes]])], [ if test "x$enableval" = "xno"; then if test "x$F77" = "xmpif90"; then gfortran --version > /dev/null if test "x$?" = "x0"; then export F77=gfortran AC_SUBST([F77], [gfortran]) fi fi if test "x$F77" = "xmpif90"; then f77 --version > /dev/null if test "x$?" = "x0"; then export F77=f77 #export F77=f77 AC_SUBST([F77], [f77]) fi fi if test "x$CXX" = "xmpicxx"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "xmpicxx"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi if test "x$F77" = "x"; then gfortran --version > /dev/null if test "x$?" = "x0"; then export F77=gfortran #export F77=gfortran AC_SUBST([F77], [gfortran]) fi fi if test "x$F77" = "x"; then f77 --version > /dev/null if test "x$?" = "x0"; then export F77=f77 #export F77=f77 AC_SUBST([F77], [f77]) fi fi if test "x$CXX" = "x"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "x"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi else mpicxx --version > /dev/null if test "x$?" = "x0"; then export CXX=mpicxx export F77=mpif90 #export CXX=mpicxx #export F77=mpif90 AC_SUBST([CXX], [mpicxx]) AC_SUBST([F77], [mpif90]) else AC_MSG_ERROR(["MPI was enabled, but no MPI compiler was found!"]) fi Loading @@ -100,28 +126,30 @@ AC_ARG_ENABLE( if test "x$CXX" = "x"; then mpicxx --version > /dev/null if test "x$?" = "x0"; then export CXX=mpicxx export F77=mpif90 #export CXX=mpicxx #export F77=mpif90 AC_SUBST([CXX], [mpicxx]) AC_SUBST([F77], [mpif90]) fi fi if test "x$CXX" = "x"; then g++ --version > /dev/null if test "x$?" = "x0"; then export CXX=g++ #export CXX=g++ AC_SUBST([CXX], [g++]) fi fi if test "x$CXX" = "x"; then clang --version > /dev/null if test "x$?" = "x0"; then export CXX=clang #export CXX=clang AC_SUBST([CXX], [clang]) fi fi ] ) AC_SUBST([CXX]) AC_PROG_CXX(CXX) AC_SUBST([F77]) AC_PROG_F77([$F77 mpif90 gfortran f77]) AC_PROG_CXX([$CXX]) AC_PROG_F77([$F77]) # Libtool initialization LT_INIT Loading @@ -129,17 +157,14 @@ LT_INIT # Environment setup AS_IF( [test "x$HDF5_INCLUDE" = "x"], [export HDF5_INCLUDE=/usr/include/hdf5/serial], [AC_MSG_NOTICE(["HDF5_INCLUDE=$HDF5_INCLUDE"])] [AC_SUBST([HDF5_INCLUDE], ["/usr/include/hdf5/serial"])], [AC_MSG_NOTICE([HDF5_INCLUDE=$(HDF5_INCLUDE)])] ) AS_IF( [test "x$HDF5_LIB" = "x"], [export HDF5_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial], [AC_MSG_NOTICE(["HDF5_LIB=$HDF5_LIB"])] [AC_SUBST([HDF5_LIB], ["/usr/lib/x86_64-linux-gnu/hdf5/serial"])], [AC_MSG_NOTICE([HDF5_LIB=$(HDF5_LIB)])] ) FFLAGS="-std=legacy -O3" CXXFLAGS="-O3 -ggdb -Wno-format-contains-nul -I $HDF5_INCLUDE" SUBDIRS="cluster libnptm sphere testing trapping" # Check for required headers AC_CHECK_HEADER( Loading @@ -152,12 +177,65 @@ AC_CHECK_HEADER( M4_HDF5_LIB AS_IF( [test "x$TEST_HDF5_LIB" = "x0"], [export HDF5_LDFLAGS="-L${HDF5_LIB} -lhdf5"], [AC_SUBST([HDF5_LDFLAGS], ["-L${HDF5_LIB} -lhdf5"])], [AC_MSG_ERROR(["HDF5 library not found!"])] ) AC_SUBST([HDF5_LDFLAGS]) # Configure the optional features M4_DETECT_LAPACK AS_IF( [test "x$LAPACK_LIBRARY" != "x"], [AC_MSG_NOTICE([LAPACK detected])], [AC_MSG_NOTICE([No LAPACK found])] ) AC_ARG_ENABLE( [openmp], [AS_HELP_STRING([--enable-openmp], [enable OpneMP multi-threading [default=yes]])], [ if test "x$enableval" != "xno"; then AC_SUBST([OMPFLAGS], ["-fopenmp"]) fi ], [ AC_SUBST([OMPFLAGS], ["-fopenmp"]) ] ) AC_ARG_WITH( [lapack], [AS_HELP_STRING([--with-lapack], [use LAPACK @<:@default=check@:>@])], [ if test "x$withval" = "xno"; then AC_SUBST([LAPACK_FLAGS], [""]) AC_SUBST([LAPACK_LDFLAGS], [""]) fi ], [ if test "x$LAPACK_INCLUDE" != "x"; then AC_SUBST([LAPACK_FLAGS], ["-DUSE_LAPACK -DLAPACK_ILP64 -DUSE_ILP64 -I${LAPACK_INCLUDE}"]) AC_SUBST([LAPACK_LDFLAGS], ["-L${LAPACK_LIB} ${LAPACK_LIBRARY}"]) fi ] ) AC_ARG_WITH( [magma], [AS_HELP_STRING([--with-magma], [use MAGMA @<:@default=check@:>@])], [], [] ) AC_ARG_ENABLE( [ilp64], [AS_HELP_STRING([--enable-ilp64], [use MAGMA @<:@default=check@:>@])], [], [] ) FFLAGS="-std=legacy -O3" CXXFLAGS="-O3 -ggdb -Wno-format-contains-nul -I$HDF5_INCLUDE $OMPFLAGS $LAPACK_FLAGS" SUBDIRS="cluster libnptm sphere testing trapping" # Send output to Makefiles AC_CONFIG_FILES([Makefile]) Loading
