Commit a16564b5 authored by Stefano Alberto Russo's avatar Stefano Alberto Russo
Browse files

Added the makemigrations, migrate and populate commands. Added info in the README.

parent 79b38d98

README.md

+13 −18
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@@ -32,9 +32,9 @@ Run 


Play



    You can now point your browser to http://localhost:8080.

    

    To run Slurm jobs use partition "partition1"

    rosetta/populate

    # You can now point your browser to http://localhost:8080.

    # To run Slurm jobs use partition "partition1"



Clean
@@ -52,9 +52,10 @@ Example Webapp configuraion 
      - ROSETTA_WEBAPP_PORT=8080

      - LOCAL_DOCKER_REGISTRY_HOST=

      - LOCAL_DOCKER_REGISTRY_PORT=5000

      - DJANGO_EMAIL_APIKEY="<API KEY>"

      - DJANGO_EMAIL_FROM="Rosetta Platform <notifications@rosetta.platform>

      - DJANGO_PUBLIC_HTTP_HOST=http://localhost:8080 # Public facing, with shttp or https

      - DJANGO_EMAIL_SERVICE=Sendgrid

      - DJANGO_EMAIL_APIKEY=

      - DJANGO_EMAIL_FROM="Rosetta <notifications@rosetta.local>"

      - DJANGO_PUBLIC_HTTP_HOST=http://localhost # Public facing, with http or https
@@ -83,22 +84,16 @@ Django development server is running on port 8080 of the "webapp" service. 


To enable live code changes, add or comment out the following in docker-compose.yaml under the "volumes" section of the "webapp" service:



    - ./services/webapp/code:/opt/webapp_code

    - ./services/webapp/code:/opt/code

    

This will mount the code from services/webapp/code as a volume inside the webapp container itself allowing to make immediately effective codebase edits.



Note that when you edit the Django ORM model, you need to rerun the migrate the database, either by just rerunning the webapp service:

Note that when you edit the Django ORM model, you need to make migrations and apply them to migrate the database:



    $ rosetta/rerun webapp

    $ rosetta/makemigrations

    $ rosetta/migrate



..ora by entering in the webapp service container and manually migrate:



    $ rosetta/shell webapp

    $ source /env.sh

    $ source /db_conf.sh

    $ cd /opt/webapp_code

    $ python3 manage.py makemigrations

    $ python3 manage.py migrate

    

### Logs and testing
@@ -110,13 +105,13 @@ Run Web App unit tests (with Rosetta running) 
    

    $ rosetta/logs webapp server

    

    $rosetta/tets

    $ rosetta/test



    

## Known issues



    SINGULARITY_TMPDIR=/...

    .singularity in user home

    .singularity in user home with limited space

rosetta/makemigrations

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#!/bin/bash



# Check if we are in the right place

if [ ! -d ./services ]; then

    echo "You must run this command from the project's root folder."

    exit 1

fi



rosetta/shell webapp "cd /opt/code && source /env.sh && source /db_conf.sh && BACKEND_LOG_LEVEL=ERROR python3 manage.py makemigrations"

rosetta/migrate

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#!/bin/bash



# Check if we are in the right place

if [ ! -d ./services ]; then

    echo "You must run this command from the project's root folder."

    exit 1

fi



rosetta/shell webapp "cd /opt/code && source /env.sh && source /db_conf.sh && BACKEND_LOG_LEVEL=ERROR python3 manage.py migrate"

rosetta/populate

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Original line number Diff line number Diff line 
#!/bin/bash



# Check if we are in the right place

if [ ! -d ./services ]; then

    echo "You must run this command from the project's root folder."

    exit 1

fi



rosetta/shell webapp "cd /opt/code && source /env.sh && source /db_conf.sh && BACKEND_LOG_LEVEL=ERROR python3 manage.py core_app_populate"