Commit 543f2a9a authored by Stefano Alberto Russo's avatar Stefano Alberto Russo
Browse files

Moved Singularity installation from the global base image to the slurm base image.

parent 154cee29

services/base/Dockerfile

+1 −42
Original line number Diff line number Diff line
@@ -25,7 +25,7 @@ RUN apt-get install net-tools iproute2 iputils-ping -y 




#------------------------

# Scienceuser user

# Rosetta user

#------------------------



# Add group. We chose GID 65527 to try avoiding conflicts.
@@ -90,47 +90,6 @@ RUN mkdir /prestartup 
COPY prestartup.py /





#----------------------

#  Singularity

#----------------------



# Dependencies

RUN apt-get update && apt-get install -y \

    build-essential \

    libssl-dev \

    uuid-dev \

    libgpgme11-dev \

    squashfs-tools \

    libseccomp-dev \

    pkg-config \

    cryptsetup-bin \

    wget



# Install GO

RUN cd /tmp && wget https://dl.google.com/go/go1.11.linux-amd64.tar.gz

RUN cd /tmp && tar -zxf go1.11.linux-amd64.tar.gz && mv go /usr/local

ENV GOROOT=/usr/local/go

ENV GOPATH=/root/go

ENV PATH=$PATH:/usr/local/go/bin:$GOPATH/bin



COPY singularity-3.4.1.tar.gz /tmp



# Install Singularity

RUN mkdir -p /usr/local/var/singularity/mnt && \

    mkdir -p $GOPATH/src/github.com/sylabs && \

    cd $GOPATH/src/github.com/sylabs && \

    mv /tmp/singularity-3.4.1.tar.gz ./ && \

    tar -xzvf singularity-3.4.1.tar.gz

RUN cd $GOPATH/src/github.com/sylabs/singularity && \

    ./mconfig -p /usr/local && \

    make -C builddir && \

    make -C builddir install



# Build test image

RUN mkdir /singularity_images && chmod 777 /singularity_images

COPY testimage.def /singularity_images/testimage.def

RUN singularity build /singularity_images/testimage.simg /singularity_images/testimage.def





#----------------------

# Entrypoint

services/slurmbase/Dockerfile

+52 −0
Original line number Diff line number Diff line 
FROM rosetta/base

MAINTAINER Stefano Alberto Russo <stefano.russo@gmail.com>



#----------------------

#  Singularity

#----------------------



# Dependencies

RUN apt-get update && apt-get install -y \

    build-essential \

    libssl-dev \

    uuid-dev \

    libgpgme11-dev \

    squashfs-tools \

    libseccomp-dev \

    pkg-config \

    cryptsetup-bin \

    wget



# Install GO

RUN cd /tmp && wget https://dl.google.com/go/go1.11.linux-amd64.tar.gz

RUN cd /tmp && tar -zxf go1.11.linux-amd64.tar.gz && mv go /usr/local

ENV GOROOT=/usr/local/go

ENV GOPATH=/root/go

ENV PATH=$PATH:/usr/local/go/bin:$GOPATH/bin



COPY singularity-3.4.1.tar.gz /tmp



# Install Singularity

RUN mkdir -p /usr/local/var/singularity/mnt && \

    mkdir -p $GOPATH/src/github.com/sylabs && \

    cd $GOPATH/src/github.com/sylabs && \

    mv /tmp/singularity-3.4.1.tar.gz ./ && \

    tar -xzvf singularity-3.4.1.tar.gz

RUN cd $GOPATH/src/github.com/sylabs/singularity && \

    ./mconfig -p /usr/local && \

    make -C builddir && \

    make -C builddir install



# Build test image

RUN mkdir /singularity_images && chmod 777 /singularity_images

COPY testimage.def /singularity_images/testimage.def

RUN singularity build /singularity_images/testimage.simg /singularity_images/testimage.def





#----------------------

#  Slurm

#----------------------



# Install Slurm

RUN apt-get -y install slurm-wlm
@@ -23,6 +69,12 @@ COPY slurm.conf /etc/slurm-llnl/slurm.conf 
RUN ln -s /var/lib/slurm-llnl /var/lib/slurm-wlm 

RUN ln -s /var/log/slurm-llnl /var/log/slurm-wlm





#----------------------

#  Test user and

#   prestartup

#----------------------



# Add testuser user

RUN useradd testuser

RUN mkdir -p /home/testuser/.ssh