Commit ef73d064 authored by Andrea Bignamini's avatar Andrea Bignamini
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Add SQLAlchemy and Django examples

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# orm_project
# Object-Relational Mapping Examples

In this repository are available some easy Object-Relational Mapping (ORM) examples.

## Getting started

To make it easy for you to get started with GitLab, here's a list of recommended next steps.

Already a pro? Just edit this README.md and make it your own. Want to make it easy? [Use the template at the bottom](#editing-this-readme)!

## Add your files

- [ ] [Create](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#create-a-file) or [upload](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#upload-a-file) files
- [ ] [Add files using the command line](https://docs.gitlab.com/ee/gitlab-basics/add-file.html#add-a-file-using-the-command-line) or push an existing Git repository with the following command:

```
cd existing_repo
git remote add origin https://www.ict.inaf.it/gitlab/bignamini/orm_project.git
git branch -M main
git push -uf origin main
```

## Integrate with your tools

- [ ] [Set up project integrations](https://www.ict.inaf.it/gitlab/bignamini/orm_project/-/settings/integrations)

## Collaborate with your team

- [ ] [Invite team members and collaborators](https://docs.gitlab.com/ee/user/project/members/)
- [ ] [Create a new merge request](https://docs.gitlab.com/ee/user/project/merge_requests/creating_merge_requests.html)
- [ ] [Automatically close issues from merge requests](https://docs.gitlab.com/ee/user/project/issues/managing_issues.html#closing-issues-automatically)
- [ ] [Enable merge request approvals](https://docs.gitlab.com/ee/user/project/merge_requests/approvals/)
- [ ] [Set auto-merge](https://docs.gitlab.com/ee/user/project/merge_requests/merge_when_pipeline_succeeds.html)

## Test and Deploy

Use the built-in continuous integration in GitLab.

- [ ] [Get started with GitLab CI/CD](https://docs.gitlab.com/ee/ci/quick_start/index.html)
- [ ] [Analyze your code for known vulnerabilities with Static Application Security Testing (SAST)](https://docs.gitlab.com/ee/user/application_security/sast/)
- [ ] [Deploy to Kubernetes, Amazon EC2, or Amazon ECS using Auto Deploy](https://docs.gitlab.com/ee/topics/autodevops/requirements.html)
- [ ] [Use pull-based deployments for improved Kubernetes management](https://docs.gitlab.com/ee/user/clusters/agent/)
- [ ] [Set up protected environments](https://docs.gitlab.com/ee/ci/environments/protected_environments.html)

***

# Editing this README

When you're ready to make this README your own, just edit this file and use the handy template below (or feel free to structure it however you want - this is just a starting point!). Thanks to [makeareadme.com](https://www.makeareadme.com/) for this template.

## Suggestions for a good README

Every project is different, so consider which of these sections apply to yours. The sections used in the template are suggestions for most open source projects. Also keep in mind that while a README can be too long and detailed, too long is better than too short. If you think your README is too long, consider utilizing another form of documentation rather than cutting out information.

## Name
Choose a self-explaining name for your project.

## Description
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## Usage
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# ORM Example - Euclid

Create the anaconda environment for this example

    conda create -n orm_django django

To activate this environment, use

    conda activate orm_django

Additional packages are needed, not available in Anaconda but installed with the `pip` command

    pip install django-extensions djangorestframework
    pip install django-composite-field django-ufilter

To deactivate an active environment, use

    conda deactivate


## Run the Django Project

Apply migrations

    python manage.py migrate

Create an admin user

    python manage.py createsuperuser

You can access the database throught the Django shell

    python manage.py shell

or running the Django web server

    python manage.py runserver

then access to <http://127.0.0.1:8000/admin>.
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import xml.etree.ElementTree as ET
import glob
from datetime import datetime
from imagedb.models import *

flist = glob.glob('resources/*.xml')

try:
  inst = Instrument.objects.get(instrumentName="NISP")
except:
  inst = Instrument.objects.create(telescopeName='Euclid', instrumentName='NISP')
   

for f in flist:
  root = ET.parse(f)
  exposureTime = float(root.find(".//ExposureTime/Value").text)
  print(root.find(".//OBT").text) 
  observationDate = datetime.strptime(root.find(".//OBT").text, 
                                      "%Y-%m-%dT%H:%M:%S.%f")
  obs_id = int(root.find(".//FieldId").text)
  dither = int(root.find(".//DitherObservation").text)
  ra = float(root.find(".//TargetPointing/RA").text)
  dec = float(root.find(".//TargetPointing/Dec").text)
  orientation = float(root.find(".//TargetPointing/Orientation").text)
  filterWheelPos = root.find(".//Filter").text[4]
  file_name = root.find(".//DataStorage/DataContainer/FileName").text
  file_name = file_name.replace("NIR_W-CALIB","LE1_NISP")
  
  data = DataContainer(
    fileFormat = 'fits',
    formatIdentifier = 'le1.nisprawframe',
    formatVersion = '1.0',
    url = "http://ia2-owncloud.oats.inaf.it/fake/7ff2f203/data/" + file_name    
  )
  data.save()
  
  image = NispRawFrame(
    exposureTime = exposureTime,
    imgNumber = 16,
    naxis1 = 2040,
    naxis2 = 2040,
    imageType = {'category':'SCIENCE', 
                 'firstType':'OBJECT', 
                 'secondType':'SKY'},
    observationDateTime = observationDate,
    observationId = obs_id,
    ditherNumber = dither,
    instrument = inst,
    commandedPointing = {'rightAscension':ra,
                         'declination':dec,
                         'orientation':orientation},
    filterWheelPosition = filterWheelPos,
    grismWheelPosition = 'OPEN'   
  )
  
  image.frameFile = data
  image.save()
  
  detList = root.findall('.//Detector')
  detList = sorted(detList, key = lambda x : x.find(".//DetectorId").text)
  
  for d in detList:
    det_id = d.find(".//DetectorId").text
    gain = float(d.find(".//Gain").text)
    readoutNoise = float(d.find(".//ReadoutNoise").text)

    detector = image.detectors.create(
      detectorId = det_id,
      gain = gain,
      readoutNoise = readoutNoise
    )
    
    coordinate1 = d.find(".//CTYPE1/CoordinateType").text
    projection1 = d.find(".//CTYPE1/ProjectionType").text
    
    coordinate2 = d.find(".//CTYPE2/CoordinateType").text
    projection2 = d.find(".//CTYPE2/ProjectionType").text
    
    crval1 = float(d.find(".//CRVAL1").text)
    crval2 = float(d.find(".//CRVAL2").text)
    crpix1 = float(d.find(".//CRPIX1").text)
    crpix2 = float(d.find(".//CRPIX2").text)
    cd1_1 = float(d.find(".//CD1_1").text)
    cd1_2 = float(d.find(".//CD1_2").text)
    cd2_1 = float(d.find(".//CD2_1").text)
    cd2_2 = float(d.find(".//CD2_2").text)
    
    Astrometry.objects.create(
      ctype1 = {'coordinateType': coordinate1, 'projectionType': 'TAN'},
      ctype2 = {'coordinateType': coordinate2, 'projectionType': 'TAN'},
      crval1 = crval1,
      crval2 = crval2,
      crpix1 = crpix1,
      crpix2 = crpix2,
      cd1_1 = cd1_1,
      cd1_2 = cd1_2,
      cd2_1 = cd2_1,
      cd2_2 = cd2_2,
      detector = detector
    )
  
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"""
Django settings for euclid_example project.

Generated by 'django-admin startproject' using Django 4.1.

For more information on this file, see
https://docs.djangoproject.com/en/4.1/topics/settings/

For the full list of settings and their values, see
https://docs.djangoproject.com/en/4.1/ref/settings/
"""

from pathlib import Path

# Build paths inside the project like this: BASE_DIR / 'subdir'.
BASE_DIR = Path(__file__).resolve().parent.parent


# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/4.1/howto/deployment/checklist/

# SECURITY WARNING: keep the secret key used in production secret!
SECRET_KEY = 'django-insecure-b=h18+$p+el@nqc+7lb7r^b+@xuo26ip92)pd=-=kjiyty&f@%'

# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True

ALLOWED_HOSTS = []


# Application definition

INSTALLED_APPS = [
    'django.contrib.admin',
    'django.contrib.auth',
    'django.contrib.contenttypes',
    'django.contrib.sessions',
    'django.contrib.messages',
    'django.contrib.staticfiles',
    'django_extensions',
    'imagedb',
    'rest_framework',
    'django_ufilter',
]


REST_FRAMEWORK = {
    'DEFAULT_FILTER_BACKENDS': [
        'django_ufilter.integrations.drf.DRFFilterBackend',
    ]
}

MIDDLEWARE = [
    'django.middleware.security.SecurityMiddleware',
    'django.contrib.sessions.middleware.SessionMiddleware',
    'django.middleware.common.CommonMiddleware',
    'django.middleware.csrf.CsrfViewMiddleware',
    'django.contrib.auth.middleware.AuthenticationMiddleware',
    'django.contrib.messages.middleware.MessageMiddleware',
    'django.middleware.clickjacking.XFrameOptionsMiddleware',
]

ROOT_URLCONF = 'euclid_example.urls'

TEMPLATES = [
    {
        'BACKEND': 'django.template.backends.django.DjangoTemplates',
        'DIRS': [],
        'APP_DIRS': True,
        'OPTIONS': {
            'context_processors': [
                'django.template.context_processors.debug',
                'django.template.context_processors.request',
                'django.contrib.auth.context_processors.auth',
                'django.contrib.messages.context_processors.messages',
            ],
        },
    },
]

WSGI_APPLICATION = 'euclid_example.wsgi.application'


# Database
# https://docs.djangoproject.com/en/4.1/ref/settings/#databases

DATABASES = {
    'default': {
        'ENGINE': 'django.db.backends.sqlite3',
        'NAME': BASE_DIR / 'db.sqlite3',
    }
}


# Password validation
# https://docs.djangoproject.com/en/4.1/ref/settings/#auth-password-validators

AUTH_PASSWORD_VALIDATORS = [
    {
        'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
    },
    {
        'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
    },
    {
        'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
    },
    {
        'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
    },
]


# Internationalization
# https://docs.djangoproject.com/en/4.1/topics/i18n/

LANGUAGE_CODE = 'en-us'

TIME_ZONE = 'UTC'

USE_I18N = True

USE_TZ = False


# Static files (CSS, JavaScript, Images)
# https://docs.djangoproject.com/en/4.1/howto/static-files/

STATIC_URL = 'static/'

# Default primary key field type
# https://docs.djangoproject.com/en/4.1/ref/settings/#default-auto-field

DEFAULT_AUTO_FIELD = 'django.db.models.BigAutoField'
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