Commit 91ff683a authored by Andrea Giannetti's avatar Andrea Giannetti
Browse files

Added Docker files

parent 341e0fa4

.dockerignore

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/etl/credentials/db_credentials*.yml

/etl/stg/archive/*

/etl/prs/fits/cubes/*

/etl/prs/fits/moments/*

/etl/prs/fits/ratios/*

/etl/prs/fits/grids/*

/etl/mdl/radmc_files/*

/etl/mdl/scratches/*

/etl/prs/output/*

/etl/*.sif
 
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Dockerfile

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FROM python:3.9-slim





# STEP 1) Setting up environment

# apt packages

RUN apt-get update && \

    apt-get --yes upgrade && \

    apt-get install --yes libgomp1 && \

    apt-get install --yes postgresql-client && \

    apt-get install --yes --reinstall build-essential && \

    apt-get -y install curl vim less nano git && \

    apt-get -y install zip unzip && \

    apt-get clean



WORKDIR /usr/src/etl

RUN python -m pip install --upgrade pip

COPY etl/requirements.txt .

RUN pip install -r requirements.txt



RUN mkdir /sak_user

# RUN /usr/sbin/usermod -d /sak_user root

RUN HOME=/sak_user

COPY documentation/radmc3d_install.sh .

RUN chmod 755 radmc3d_install.sh

RUN HOME=/sak_user;./radmc3d_install.sh

ENV PATH="/sak_user/bin:${PATH}"

ENV PYTHONPATH="/sak_user/bin/python:${PYTHONPATH}"

RUN chmod 755 /sak_user/bin/radmc3d



# STEP 2) Bundling app

COPY etl .



CMD python main.py
 
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apptainer.def

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Bootstrap: docker

From: postgres:14.1-alpine



%environment

export POSTGRES_DB=$DB_NAME

export POSTGRES_USER=$DB_USER

export POSTGRES_PASSWORD=$DB_PASS

create_apptainer_image_file.sh

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rm swiss_army_knife_latest.sif

singularity pull --disable-cache docker://git.ia2.inaf.it:5050/andrea.giannetti/swiss_army_knife

docker-compose.yaml

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version: '3.8'

services:

  db:

    image: postgres:14.1-alpine

    container_name: db_container_sak

    restart: always

    environment:

      - POSTGRES_DB=$DB_NAME

      - POSTGRES_USER=$DB_USER

      - POSTGRES_PASSWORD=$DB_PASS

    ports:

      - '31000:5432'

    volumes:

      - db:/var/lib/postgresql/data

    networks:

      - sak_network



  etl:

    build:

      dockerfile: Dockerfile

    container_name: 'etl_sak'

    image: 'sak_etl'

    depends_on:

      - db

    stdin_open: true

    tty: true

    networks:

      - sak_network

    volumes:

      - ./etl:/usr/src/etl

volumes:

  db:

    driver: local

networks:

  sak_network:

    name: 'sak_app_network'
 
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