#### The staging configuration file (`etl/stg/config/config.yml`)
The staging config file has three main categories:
***grid:**
* grid_type: regular or spherical
* coordinate_system: cartesian or polar
* central_density: the central gas number density of the toy model. If you are using a power-law distribution, it corresponds also to the maximum possible density in the grid.
* central_density: the central gas number density of the toy model. If you are using a power-law distribution, it
corresponds also to the maximum possible density in the grid.
* density_unit: the units in which the number density is expressed, e.g. 'cm^-3'
* density_powerlaw_idx: the power-law index of the density distribution
* density_value_at_reference: the gas number density at a reference value, e.g. at 1 pc
@@ -75,26 +77,34 @@ The staging config file has three main categories:
* dust_temperature_powerlaw_idx: the dust temperature power-law index
* microturbulence: the unresolved turbulent velocity of the gas
* microturbulence_unit: the units of the microturbulence value, e.g. 'km/s'
* dimN: a dictionary-like parameter, it should include the 'size', 'size_unit', 'shape', and 'refpix' keys. E.g. {"size":1, "size_units": "pc", "shape": 3, "refpix": 1}. If only dim1 is provided, the grid is cubic.
* dimN: a dictionary-like parameter, it should include the 'size', 'size_unit', 'shape', and 'refpix' keys. E.g. {"
size":1, "size_units": "pc", "shape": 3, "refpix": 1}. If only dim1 is provided, the grid is cubic.
* size: the grid size in physical units
* size_unit: the units in which the grid size is expressed, e.g. 'pc'
* shape: the number of cells in the grid for this axis
* refpix: the reference pixel that corresponds to the grid "centre" from which the distance are computed for power-law models, for instance
* velocity_field: velocity field to apply to the gas, it can only be 'solid' at the moment (the gas is assumed to rotate around the y axis). Power-law is in principle also supported, but the wiring is still to be implemented.
* refpix: the reference pixel that corresponds to the grid "centre" from which the distance are computed for
power-law models, for instance
* velocity_field: velocity field to apply to the gas, it can only be 'solid' at the moment (the gas is assumed to
rotate around the y axis). Power-law is in principle also supported, but the wiring is still to be implemented.
* velocity_gradient: the value of the velocity gradient for solid-body roation.
* velocity_gradient_unit: the unit of the velocity gradient, e.g. "km/s/pc"
***lines:**
* species_to_include: the list of molecular species to include in the RADMC postprocessing, e.g. ['e-ch3oh']
* molecular_abundances: a dict-like parameter, containing the species name and the corresponding fractional abundance, e.g. {"e-ch3oh": 1e-8, "p-h2": 1}
* lines_mode: the line transfer mode. It can be 'lte', 'lvg', 'optically_thin_non_lte', 'user_defined_populations' (see the RADMC documentation if in doubt)
* collision_partners: the list of collision partners to be used; it must appear in the correct order as in the molecule_{molname}.inp file of the molecule to be simulated, e.g. ['p-h2']
* molecular_abundances: a dict-like parameter, containing the species name and the corresponding fractional
abundance, e.g. {"e-ch3oh": 1e-8, "p-h2": 1}
* lines_mode: the line transfer mode. It can be 'lte', 'lvg', 'optically_thin_non_lte', 'user_defined_populations' (
see the RADMC documentation if in doubt)
* collision_partners: the list of collision partners to be used; it must appear in the correct order as in the
molecule_{molname}.inp file of the molecule to be simulated, e.g. ['p-h2']
***radmc:**
* nphotons: the number of photons to use for the postprocessing
* scattering_mode_max: override the scattering settings in the dust opacity files; 0 excludes scattering, 1 treats it in an isotropic way (if defined), 2 includes anisotropic scattering (if defined)
* scattering_mode_max: override the scattering settings in the dust opacity files; 0 excludes scattering, 1 treats
it in an isotropic way (if defined), 2 includes anisotropic scattering (if defined)
* iranfreqmode: 1
* tgas_eq_tdust: whether the gas temperature is equal to the dust temperature (if not, it must be specified or computed separately!)
* tgas_eq_tdust: whether the gas temperature is equal to the dust temperature (if not, it must be specified or
computed separately!)
#### The model configuration file (`etl/mdl/config/config.yml`)
@@ -116,9 +126,12 @@ The global configuration file has only the "overrides" category:
***overrides:**
dust_temperature_grid_type: the spacing in the dust temperature grid, can be: 'linear', 'log'
dust_temperature_limits: the limits in the dust temperature grid, e.g. [10, 30]; the last point is excluded
dust_temperature_step: the step size in the grid; if the spacing is logarithmic, it represents the increase factor, e.g. 10 means steps of one order of magnitude
dust_temperature_step: the step size in the grid; if the spacing is logarithmic, it represents the increase factor,
e.g. 10 means steps of one order of magnitude
gas_density_grid_type: the spacing in the gas number density grid, can be: 'linear', 'log'
gas_density_limits: the limits in the gas number density grid, e.g. [1e4, 1e8]; the last point is excluded
gas_density_step: the step size in the grid; if the spacing is logarithmic, it represents the increase factor, e.g. 10 means steps of one order of magnitude
gas_density_step: the step size in the grid; if the spacing is logarithmic, it represents the increase factor, e.g. 10
means steps of one order of magnitude
gas_density_unit: the units in which the gas number density is expressed, e.g. 'cm^-3'
lines_to_process: the list of line identifiers to process, according to the molecule_{molname}.inp file, e.g. ['87', '86']
lines_to_process: the list of line identifiers to process, according to the molecule_{molname}.inp file,
