Commit 3c969b54 authored by Andrea Giannetti's avatar Andrea Giannetti
Browse files

Updated slurm templates.

parent 64a43490

etl/sbatch_command.sh

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@@ -8,6 +8,6 @@ 
#SBATCH --cpus-per-task=2

##SBATCH --mem-per-cpu=800



apptainer-setup 1.0.1-centos7

apptainer-setup

echo $run_id

srun singularity exec -B .:$HOME swiss_army_knife_latest.sif python main.py --distributed True --run_id $1 > run.log

etl/slurm_template.sh

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@@ -3,10 +3,10 @@ 
pwd

cd /homes/agianne/agianne/sak/swiss_army_knife_lr_ple05/etl

pwd

apptainer-setup 1.0.1-centos7

apptainer-setup



run_id_output=$(singularity exec -B .:$HOME swiss_army_knife_latest.sif python -c'import main; main.initialize_run()')

run_id=$(echo $run_id_output | rev | cut -d" " -f1 | rev)

run_id=$(head -n 1 run_id.txt)



remaining_tasks_output=$(singularity exec -B .:$HOME swiss_army_knife_latest.sif python -c'import main; main.compute_remaining_models("'$run_id'")')

remaining_tasks=$(echo $remaining_tasks_output | rev | cut -d" " -f1 | rev)