sistemato (ce6f57e5) · Commits · Alessandro Frigeri / pymoondb

moondb.py

+208 −59

Original line number	Diff line number	Diff line
		#!/usr/bin/python
		#!/usr/bin/python3
		#
		# Alessandro Frigeri 2019
		# (c) 2019 Alessandro Frigeri, Istituto Nazionale di Astrofisica
		#
		# MoonDB Python module
		# https://realpython.com/api-integration-in-python/

		import requests
		import json
		import urllib.parse
		from collections import namedtuple

		def _url(path):
		return "http://api.moondb.org" + path
		class Mission:
		def __init__(self,name):
		self.name = name
		def __str__(self):
		return self.name

		def get_specimen():
		pass
		class Landmark:
		def __init__(self,name):
		self.name = name

		def get_specimentype():
		pass
		class Specimen:
		def __init__(self):
		self.specimenCode = ""
		self.specimenName = ""
		self.parentSpecimen = ""
		self.childSpecimens = ""
		self.specimenType = ""
		self.samplingTechnique = ""
		self.mission = ""
		self.landmark = ""
		self.lunarStation = ""
		self.returnContainer = ""
		self.weight = ""
		self.pristinity = ""
		self.pristinityDate = ""
		self.description = ""
		def say_hello(self):
		print('Hello Moon!')
		def __str__(self):
		return self.specimenName
		def __repr__(self):
		return self.specimenName

		def get_mission():
		pass
		class SpecimenType:
		def __init__(self,name):
		self.name = name
		def __str__(self):
		return self.name
		def __repr__(self):
		return self.name

		class SamplingTechnique:
		def __init__(self,name):
		self.name = name
		def __str__(self):
		return self.name
		def __repr__(self):
		return self.name

		class AnalyzedMaterial:
		def __init__(self,name):
		self.name = name
		def __str__(self):
		return self.name
		def __repr__(self):
		return self.name

		class Analyte:
		def __init__(self,name):
		self.name = name
		def __str__(self):
		return self.name
		def __repr__(self):
		return self.name

		class AnalysisMethod:
		def __init__(self,code,name):
		self.name = name
		self.code = code
		def __str__(self):
		return self.name
		def __repr__(self):
		return self.name



		class AnalyisMethod:
		def __init__(self,name):
		self.name = name



		def _url(path):
		print(urllib.parse.quote(path))
		return "http://api.moondb.org" + urllib.parse.quote(path)

		def _check_resp(resp):
		if resp.status_code != 200:
		#raise ApiError('Cannot fetch all objects: {}'.format(resp.status_code))
		pass

		def _get_resp(path):
		resp = requests.get(_url( path ))
		_check_resp(resp)
		r = resp.json()
		# To be checked with Peng
		if 'results' in r:
		return r['results']
		if 'result' in r:
		return r['result']

		def get_specimen(sc=None,mn=None,ln=None,sty=None,ste=None):
		'''
		Get specimen by:
		- specimen code - sc
		- mission name - mn
		- landmark name - ln
		- speciment type - sty
		- sampling technique - ste
		'''
		sp_list = []
		if sc:
		for s in sc:
		spec = _get_resp('/specimen/'+s)
		sp_list.extend(spec)
		if mn:
		for n in mn:
		spec = _get_resp('/specimenlist/mission/'+n)
		sp_list.extend(spec)

		if ln:
		for n in ln:
		spec = _get_resp('/specimenlist/mission/'+n)
		sp_list.extend(spec)

		if sty:
		for st in sty:
		spec = _get_resp('/specimenlist/mission/'+st)
		sp_list.extend(spec)

		if ste:
		for st in ste:
		spec = _get_resp('/specimenlist/mission/'+st)
		sp_list.extend(spec)

		from collections import namedtuple

		sp_obj_list = []

		for s in sp_list:
		s_obj = namedtuple("Specimen", s.keys())(*s.values())
		sp_obj_list.append(s_obj)

		return sp_obj_list






		def _json_object_hook(d):
		return namedtuple('X', d.keys())(*d.values())

		def json2obj(data):
		return json.loads(data, object_hook=_json_object_hook)

		def get_analytes():
		analytes = []
		resp = requests.get(_url('/cv/analytes/'))
		_check_resp(resp)
		for m_item in resp.json()['result']:
		analytes.append( Analyte(m_item['name'] ))
		return analytes


		def get_missions():
		missions = []
		resp = requests.get(_url('/authorities/missions/'))
		_check_resp(resp)
		print resp.json()['result']
		for m_item in resp.json()['result']:
		for m_item in resp.json()['results']:
		missions.append( Mission(m_item['name'] ))
		print(m_item)
		#this_m = json.load( "{'name': 'Apollo 11'}" )
		return missions

		def get_missions2():
		resp = requests.get(_url('/authorities/missions/'))
		#m2 = json.loads(resp)
		print(resp)
		return resp.json()['result']
		## Controlled Vocabularies

		def get_specimentypes():
		st_list = []
		st = _get_resp('/cv/specimentypes')
		for s in st:
		stobj = SpecimenType(s['name'])
		st_list.append(stobj)
		return st_list

		def get_samplingtechniques():
		st_list = []
		st = _get_resp('/cv/samplingtechniques')
		for s in st:
		stobj = SamplingTechnique(s['name'])
		st_list.append(stobj)
		return st_list

		def get_analyzedmaterials():
		st_list = []
		st = _get_resp('/cv/analyzedmaterials')
		for s in st:
		stobj = AnalyzedMaterial(s['name'])
		st_list.append(stobj)
		return st_list

		def get_analytes():
		analytes = []
		an = _get_resp('/cv/analyzedmaterials')
		for a in an:
		analytes.append( Analyte(m_item['name'] ))
		return analytes

		def get_analysismethods():
		am_list = []
		am = _get_resp('/cv/analysismethods')
		for a in am:
		aobj = AnalysisMethod(s['name'])
		am_list.append(aobj)
		return am_list

		def get_landmark():
		pass
		@@ -73,11 +234,9 @@ class Filter:
		self.analyte = []
		self.analysisMethod = []
		def _toJSON(self):
		#indent=4
		return json.dumps(self, default=lambda o: o.__dict__,sort_keys=True,separators=(",", ":"))

		def get_results(self):
		#print self._toJSON()
		#print _url('/data/'+self._toJSON() )
		resp = requests.get(_url('/data/'+self._toJSON() ))
		res_list = []

		@@ -86,50 +245,40 @@ class Filter:
		res_list.append(rd)
		return res_list

		class Mission:
		def __init__(self,name):
		self.name = name

		class Specimen:
		def __init__(self):
		self.specimenCode = ""
		self.specimenName = ""
		self.parentSpecimen = ""
		self.childSpecimens = ""
		self.specimenType = ""
		#self.samplingTechnique":null,"mission":"Apollo 12","landmark":null,"lunarStation":null,"returnContainer":null,"weight":null,"pristinity":null,"pristinityDate":null,"description":null}


		class AnalysisMethos:
		def __init__(self,code,name):
		self.name = name
		self.code = code

		class Analyte:
		def __init__(self,name):
		self.name = name



		if __name__ == "__main__":
		m = get_missions()
		print m
		f = Filter()
		f.specimenType = ["SOIL"]
		f.analyte = ["H2O","Ti"]
		f.mission = ["Apollo 11"]
		print 80*"#"
		print(80*"#")
		#print f.toJSON()
		results = f.get_results()
		for r in results:
		print r
		print "********"
		this_res = r['dataResults'][0]
		print this_res
		var = this_res['variable']
		val = this_res['value']
		unit = this_res['unit']
		print var,": ",val,unit
		print(var,": ",val,unit)

		s = get_specimen(mn=['Apollo 12','Apollo 11'])
		print(len(s))
		s1 = s[0]

		m = get_missions()
		ml = []
		for mn in m:
		ml.append(mn.name)
		s = get_specimen(mn=ml)
		print(len(s))
		s1 = s[0]
		#s1.say_hello()
		#print(type(s1))
		#for sp in s:
		# print(sp['specimenName'])
		#sp_types = get_specimentypes()
		#print(sp_types)

notebooks/print.prt

deleted100644 → 0

+0 −60

Original line number	Diff line number	Diff line
		Object = cam2map
		IsisVersion = "3.6.2 \| 2-28-2019"
		ProgramVersion = 2016-06-29
		ProgramPath = /Users/alf/miniconda2/envs/isis3/bin
		ExecutionDateTime = 2019-04-17T15:14:19
		HostName = Unknown
		UserName = alf
		Description = "Convert camera image to a map projection"

		Group = UserParameters
		MAP = $base/templates/maps/sinusoidal.map
		MATCHMAP = false
		PIXRES = CAMERA
		DEFAULTRANGE = MINIMIZE
		LONSEAM = AUTO
		INTERP = CUBICCONVOLUTION
		WARPALGORITHM = AUTOMATIC
		End_Group

		Group = Error
		Program = cam2map
		Class = "USER ERROR"
		Code = 2
		Message = "Parameter [FROM] must be entered"
		File = IsisAml.cpp
		Line = 2867
		End_Group
		End_Object


		Object = cam2map
		IsisVersion = "3.6.2 \| 2-28-2019"
		ProgramVersion = 2016-06-29
		ProgramPath = /Users/alf/miniconda2/envs/isis3/bin
		ExecutionDateTime = 2019-04-17T15:17:02
		HostName = Unknown
		UserName = alf
		Description = "Convert camera image to a map projection"

		Group = UserParameters
		MAP = $base/templates/maps/sinusoidal.map
		MATCHMAP = false
		PIXRES = CAMERA
		DEFAULTRANGE = MINIMIZE
		LONSEAM = AUTO
		INTERP = CUBICCONVOLUTION
		WARPALGORITHM = AUTOMATIC
		End_Group

		Group = Error
		Program = cam2map
		Class = "USER ERROR"
		Code = 2
		Message = "Parameter [FROM] must be entered"
		File = IsisAml.cpp
		Line = 2867
		End_Group
		End_Object