Commit a6742a45 authored by Alessandro Frigeri's avatar Alessandro Frigeri
Browse files

updated examples

parent 199d7161

examples/Apollo12_soils.py

+5 −3
Original line number Diff line number Diff line 
import moondb,sys



#!/usr/bin/env python3



import moondb,sys



# Let's setup the data filter

f = moondb.AnalysisFilter()
@@ -11,8 +11,10 @@ f.specimenType = ["SOIL"] 
results = f.get_results()



for r in results:

   print('\nDataset: ',r.dataset) 

   print('Lab,Specie,value')

   for dr in r.dataResults:

      print(dr.laboratory,dr.variable,dr.value,dr.unit)

      print(",".join([dr.laboratory,dr.variable,dr.value+dr.unit]))

examples/example1.ipynb

+123 −19
Original line number Diff line number Diff line 
%% Cell type:markdown id: tags:



## MoonDB Jupyter notebook workbook

#### Alessandro Frigeri, IAPS/INAF, Rome Italy







%% Cell type:code id: tags:



``` python

import moondb

# First we import the moondb module

%load_ext autoreload

%autoreload 2



%aimport moondb



print(moondb.__file__)

```



%% Output



    The autoreload extension is already loaded. To reload it, use:

      %reload_ext autoreload

    /home/alf/gitwrk/pymoondb/moondb/__init__.py



%% Cell type:code id: tags:



``` python

m = moondb.get_missions()

# Let's get a list of the missions in MoonDB



mlist = moondb.get_missions()



[m.name for m in mlist]

```



%% Output



    {'name': 'Apollo 11'}

    {'name': 'Apollo 12'}

    {'name': 'Apollo 14'}

    {'name': 'Apollo 15'}

    {'name': 'Apollo 16'}

    {'name': 'Apollo 17'}

    {'name': 'Luna 16'}

    {'name': 'Luna 20'}

    {'name': 'Luna 24'}

    ['Apollo 11',

     'Apollo 12',

     'Apollo 14',

     'Apollo 15',

     'Apollo 16',

     'Apollo 17',

     'Luna 16',

     'Luna 20',

     'Luna 24']



%% Cell type:code id: tags:



``` python

f = moondb.Filter()

#f.specimenType = ["SOIL"]

# Now, we want to know how many specimens are available from the Apollo 17 missions



f = moondb.SpecimenFilter()

mission = 'Apollo 17'

f.missionName = [ mission ]

results = f.get_results()

specimen_list = [r for r in results]



print("MoonDB holds {} specimens from  Apollo 17.".format(len(specimen_list)))

```



%% Output



    MoonDB holds 2991 specimens from  Apollo 17.



%% Cell type:code id: tags:



``` python

len(results)

# Get a list of type of specimen of Apollo 17 available in MoonDB

s_list = [s.specimenType for s in specimen_list]

list(sorted(set(s_list)))

```



%% Output



    37034

    ['COMPOSITE',

     'ROCK',

     'ROCK/Basalt/Ilmenite Basalt',

     'ROCK/Basalt/Unclassified Basalt',

     'ROCK/Breccia/Fragmental Breccia',

     'ROCK/Breccia/Impact Melt Breccia',

     'ROCK/Breccia/Regolith Breccia',

     'ROCK/Breccia/Unclassified Breccia',

     'ROCK/Crustal/Crustal:Cataclasite',

     'ROCK/Crustal/Crustal:Norite',

     'ROCK/Crustal/Crustal:Troctolite',

     'SOIL/Soil:1-2mm',

     'SOIL/Soil:2-4mm',

     'SOIL/Soil:4-10mm',

     'SOIL/Soil:<1mm',

     'SOIL/Soil:Unsieved',

     'Unknown']



%% Cell type:code id: tags:



``` python

```



%% Cell type:code id: tags:



``` python

```



%% Cell type:code id: tags:



``` python

an = print(results[0])

#

# Let's see the analyses done on the first specimen

#



s_list = [s for s in specimen_list]



print(len(s_list))



s0 = s_list[0]



an_list = [a for a in s0.get_analyses()]

```



%% Output



    {'analysisCode': '15100,3#3#0158', 'analyzedMaterial': 'WHOLE ROCK', 'comment': '0.97 g, 950C', 'dataset': 'IRVING, 1972#TABLE 1', 'citation': 'IRVING, 1972', 'dataResults': [{'unit': 'ppm', 'laboratory': 'UNKNOWN', 'variable': 'H', 'methodName': 'UNKNOWN', 'methodComment': 'COMBUSTION (NEW LINE, YIELDING LOW BLANKS)', 'value': '90.0', 'methodCode': 'UNKNOWN'}, {'unit': 'per mil', 'laboratory': 'UNKNOWN', 'variable': 'DELTA_D', 'methodName': 'UNKNOWN', 'methodComment': 'COMBUSTION (NEW LINE, YIELDING LOW BLANKS)', 'value': '-554.0', 'methodCode': 'UNKNOWN'}, {'unit': 'ppm', 'laboratory': 'UNKNOWN', 'variable': 'C', 'methodName': 'UNKNOWN', 'methodComment': 'COMBUSTION (NEW LINE, YIELDING LOW BLANKS)', 'value': '99.0', 'methodCode': 'UNKNOWN'}, {'unit': 'per mil', 'laboratory': 'UNKNOWN', 'variable': 'DELTA_C13', 'methodName': 'UNKNOWN', 'methodComment': 'COMBUSTION (NEW LINE, YIELDING LOW BLANKS)', 'value': '7.9', 'methodCode': 'UNKNOWN'}]}

    2991



%% Cell type:code id: tags:



``` python

# now we check the results of the first analysis



#result_of



print(an_list[0].dataResultsObj)

```



%% Output



    [result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY (code MC-ICP-MS), result of CACULATED (code CALC)]



%% Cell type:code id: tags:



``` python

print(anaobj)







print(mission+" specimen: ",s0.specimenName)

for r in an_list[0].dataResultsObj:

   print('Result: {} {} {} ({})'.format(r.variable,r.value,r.unit,r.methodName))

```



%% Output



    None

    Apollo 17 specimen:  76535,16

    Result: Os 8.5 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Ir 55.0 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Ru 81.0 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Pt 54.0 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Pd 89.0 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Re 9.0 ppb (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Re187_Os188 5.1 Not Applicable (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: Os187_Os188 0.1511 Not Applicable (MULTICOLLECTOR INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY)

    Result: G_Os(T) -348.0 Not Applicable (CACULATED)



%% Cell type:code id: tags:



``` python

```



%% Cell type:code id: tags:



``` python

```



%% Cell type:code id: tags:



``` python

```

examples/specimen.py

100644 → 100755
+18 −0
Original line number Diff line number Diff line 
#!/usr/bin/env python3



import moondb



s_12023 = moondb.get_specimens(sc=['12023'])[0]



#print(s_12023)



child = moondb.get_specimens(sc=['12023,114'])[0]



#print(' A N A L Y S E S ')

a = child.get_analyses()





print(a[0])



a0_results = a[0].dataResultsObj





print('Result: {} {} {}'.format(a0_results[0].variable,a0_results[0].value,a0_results[0].unit,a0_results[0].methodName))

examples/specimens_weight.py→examples/total_specimens_weight.py

+3 −16
Original line number Diff line number Diff line 
#!/usr/bin/env python3



import moondb,sys
@@ -16,22 +18,7 @@ for m in moon_missions: 
   weight_cum += weight

   print("MoonDB holds {:.3f} kg of specimens from {}".format(weight/1000.0,m.name))



print("MoonDB contains a total of {:.3f} kg of specimen from the Moon!".format(weight_cum/1000.0))





f = moondb.AnalysisFilter()

f.mission = ["Apollo 11"]

f.analyte = ["Na2O","CaO"]

f.specimenType = ["SOIL"]







results = f.get_results()



for r in results:

   for dr in r.dataResults:

      print(dr)

      #print(dr.laboratory,dr.variable,dr.value,dr.unit)

print("\nMoonDB contains a total of {:.3f} kg of specimen from the Moon!".format(weight_cum/1000.0))

moondb/__pycache__/__init__.cpython-37.pyc

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