Merge remote-tracking branch 'upstream/master'

  - conda install -c jlaura pvl protobuf

  # Development installation

  - conda install nose coverage

  - conda install nose coverage sh anaconda-client

  - pip install coveralls

  # Install sh and binstar to support upload to Anaconda

  - conda install -n root conda-build

  - conda install sh anaconda-client

  # Straight from the menpo team

  - if [["$TRAVIS_OS_NAME" == "osx"]]; then

      curl -o condaci.py https://raw.githubusercontent.com/menpo/condaci/v0.4.8/condaci.py;

environment:

  CONDA_INSTALL_LOCN: "C:\\conda"

  # SDK v7.0 MSVC Express 2008's SetEnv.cmd script will fail if the

  # /E:ON and /V:ON options are not enabled in the batch script intepreter

  # See: http://stackoverflow.com/a/13751649/163740

  CMD_IN_ENV: "cmd /E:ON /V:ON /C obvci_appveyor_python_build_env.cmd"

  # We set a default Python version for the miniconda that is to be installed. This can be

  # overridden in the matrix definition where appropriate.

  CONDA_PY: "27"

  matrix:

    - TARGET_ARCH: x64

      CONDA_PY: 35

# We always use a 64-bit machine, but can build x86 distributions

# with the TARGET_ARCH variable.

platform:

    - x64

install:

    # If there is a newer build queued for the same PR, cancel this one.

    # The AppVeyor 'rollout builds' option is supposed to serve the same

    # purpose but it is problematic because it tends to cancel builds pushed

    # directly to master instead of just PR builds (or the converse).

    # credits: JuliaLang developers.

    - ps: if ($env:APPVEYOR_PULL_REQUEST_NUMBER -and $env:APPVEYOR_BUILD_NUMBER -ne ((Invoke-RestMethod `

        https://ci.appveyor.com/api/projects/$env:APPVEYOR_ACCOUNT_NAME/$env:APPVEYOR_PROJECT_SLUG/history?recordsNumber=50).builds | `

        Where-Object pullRequestId -eq $env:APPVEYOR_PULL_REQUEST_NUMBER)[0].buildNumber) { `

          throw "There are newer queued builds for this pull request, failing early." }

    # Cywing's git breaks conda-build. (See https://github.com/conda-forge/conda-smithy-feedstock/pull/2.)

    - cmd: rmdir C:\cygwin /s /q

    - appveyor DownloadFile "https://raw.githubusercontent.com/pelson/Obvious-CI/master/bootstrap-obvious-ci-and-miniconda.py"

    - cmd: python bootstrap-obvious-ci-and-miniconda.py %CONDA_INSTALL_LOCN% %TARGET_ARCH% %CONDA_PY:~0,1% --without-obvci

    - cmd: set PATH=%CONDA_INSTALL_LOCN%;%CONDA_INSTALL_LOCN%\scripts;%PATH%

    - cmd: set PYTHONUNBUFFERED=1

    - cmd: conda config --set show_channel_urls true

    - cmd: conda install -c pelson/channel/development --yes --quiet obvious-ci

    - cmd: conda config --add channels conda-forge

    - cmd: conda info

    - cmd: conda install -n root --quiet --yes conda-build anaconda-client jinja2 setuptools

    # Workaround for Python 3.4 and x64 bug in latest conda-build.

    # FIXME: Remove once there is a release that fixes the upstream issue

    # ( https://github.com/conda/conda-build/issues/895 ).

    - cmd: if "%TARGET_ARCH%" == "x64" if "%CONDA_PY%" == "34" conda install conda-build=1.20.0 --yes

    # Now install the pacakge dependencies

    - cmd: conda config --add channels conda-forge

    - cmd: conda config --add channels jlaura

    - cmd: conda install --yes -c conda-forge gdal h5py

    - cmd: conda install --yes pandas sqlalchemy pyyaml

    - cmd: conda install --yes -c jlaura protobuf pvl

    # Development installation

    - cmd: conda install --yes nose coverage

    - cmd: pip install coveralls

# Skip .NET project specific build phase.

build: off

test_script:

    - cmd: nosetests --with-coverage --cover-package=plio

    - "%CMD_IN_ENV% conda build conda --quiet"

deploy_script:

    - 'python ci_support\upload_or_check_non_existence.py .\conda jlaura --channel=main'

#!/usr/bin/env python

from __future__ import print_function

import argparse

import hashlib

import os

import subprocess

import sys

from binstar_client.utils import get_binstar

import binstar_client.errors

import conda.config

from conda_build.metadata import MetaData

from conda_build.build import bldpkg_path

def built_distribution_already_exists(cli, meta, owner):

    """

    Checks to see whether the built recipe (aka distribution) already

    exists on the owner/user's binstar account.

    """

    distro_name = '{}/{}.tar.bz2'.format(conda.config.subdir, meta.dist())

    fname = bldpkg_path(meta)

    try:

        dist_info = cli.distribution(owner, meta.name(), meta.version(),

                                     distro_name)

    except binstar_client.errors.NotFound:

        dist_info = {}

    exists = bool(dist_info)

    # Unfortunately, we cannot check the md5 quality of the built distribution, as

    # this will depend on fstat information such as modification date (because

    # distributions are tar files). Therefore we can only assume that the distribution

    # just built, and the one on anaconda.org are the same.

#    if exists:

#        md5_on_binstar = dist_info.get('md5')

#        with open(fname, 'rb') as fh:

#            md5_of_build = hashlib.md5(fh.read()).hexdigest()

#

#        if md5_on_binstar != md5_of_build:

#            raise ValueError('This build ({}), and the build already on binstar '

#                             '({}) are different.'.format(md5_of_build, md5_on_binstar))

    return exists

def upload(cli, meta, owner, channels):

    try:

        with open('binstar.token', 'w') as fh:

            fh.write(cli.token)

        subprocess.check_call(['anaconda', '--quiet', '-t', 'binstar.token',

                               'upload', bldpkg_path(meta),

                               '--user={}'.format(owner),

                               '--channel={}'.format(channels)],

                              env=os.environ)

    finally:

        os.remove('binstar.token')

def distribution_exists_on_channel(binstar_cli, meta, owner, channel='main'):

    """

    Determine whether a distribution exists on a specific channel.

    Note from @pelson: As far as I can see, there is no easy way to do this on binstar.

    """

    fname = '{}/{}.tar.bz2'.format(conda.config.subdir, meta.dist())

    distributions_on_channel = [dist['basename'] for dist in

                                binstar_cli.show_channel(owner=owner, channel=channel)['files']]

    return fname in distributions_on_channel

def add_distribution_to_channel(binstar_cli, meta, owner, channel='main'):

    """

    Add a(n already existing) distribution on binstar to another channel.

    Note - the addition is done based on name and version - no build strings etc.

    so if you have a foo-0.1-np18 and foo-0.1-np19 *both* will be added to the channel.

    """

    package_fname = '{}/{}.tar.bz2'.format(conda.config.subdir, meta.dist())

    binstar_cli.add_channel(channel, owner, meta.name(), meta.version())

def main():

    token = os.environ.get('BINSTAR_KEY')

    description = ('Upload or check consistency of a built version of a '

                   'conda recipe with binstar. Note: The existence of the '

                   'BINSTAR_KEY environment variable determines '

                   'whether the upload should actually take place.')

    parser = argparse.ArgumentParser(description=description)

    parser.add_argument('recipe_dir', help='the conda recipe directory')

    parser.add_argument('owner', help='the binstar owner/user')

    parser.add_argument('--channel', help='the binstar channel', default='main')

    args = parser.parse_args()

    recipe_dir, owner, channel = args.recipe_dir, args.owner, args.channel

    cli = get_binstar(argparse.Namespace(token=token, site=None))

    meta = MetaData(recipe_dir)

    if meta.skip():

        print("No upload to take place - this configuration was skipped in build/skip.")

        return

    exists = built_distribution_already_exists(cli, meta, owner)

    if token:

        on_channel = distribution_exists_on_channel(cli, meta, owner, channel)

        if not exists:

            upload(cli, meta, owner, channel)

            print('Uploaded {}'.format(bldpkg_path(meta)))

        elif not on_channel:

            print('Adding distribution {} to {}\'s {} channel'

                  ''.format(bldpkg_path(meta), owner, channel))

            add_distribution_to_channel(cli, meta, owner, channel)

        else:

            print('Distribution {} already \nexists on {}\'s {} channel.'

                  ''.format(bldpkg_path(meta), owner, channel))

    else:

        print("No BINSTAR_KEY present, so no upload is taking place. "

              "The distribution just built {} already available on {}'s "

              "{} channel.".format('is' if exists else 'is not',

                                   owner, channel))

if __name__ == '__main__':

    main()

 No newline at end of file

nbsphinx

 No newline at end of file

# Makefile for Sphinx documentation

#

# You can set these variables from the command line.

SPHINXOPTS    =

SPHINXBUILD   = sphinx-build

PAPER         =

BUILDDIR      = build

# User-friendly check for sphinx-build

ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)

	$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don\'t have Sphinx installed, grab it from http://sphinx-doc.org/)

endif

# Internal variables.

PAPEROPT_a4     = -D latex_paper_size=a4

PAPEROPT_letter = -D latex_paper_size=letter

ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

# the i18n builder cannot share the environment and doctrees with the others

I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

.PHONY: help

help:

	@echo "Please use \`make <target>' where <target> is one of"

	@echo "  html       to make standalone HTML files"

	@echo "  dirhtml    to make HTML files named index.html in directories"

	@echo "  singlehtml to make a single large HTML file"

	@echo "  pickle     to make pickle files"

	@echo "  json       to make JSON files"

	@echo "  htmlhelp   to make HTML files and a HTML help project"

	@echo "  qthelp     to make HTML files and a qthelp project"

	@echo "  applehelp  to make an Apple Help Book"

	@echo "  devhelp    to make HTML files and a Devhelp project"

	@echo "  epub       to make an epub"

	@echo "  epub3      to make an epub3"

	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"

	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"

	@echo "  latexpdfja to make LaTeX files and run them through platex/dvipdfmx"

	@echo "  text       to make text files"

	@echo "  man        to make manual pages"

	@echo "  texinfo    to make Texinfo files"

	@echo "  info       to make Texinfo files and run them through makeinfo"

	@echo "  gettext    to make PO message catalogs"

	@echo "  changes    to make an overview of all changed/added/deprecated items"

	@echo "  xml        to make Docutils-native XML files"

	@echo "  pseudoxml  to make pseudoxml-XML files for display purposes"

	@echo "  linkcheck  to check all external links for integrity"

	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"

	@echo "  coverage   to run coverage check of the documentation (if enabled)"

	@echo "  dummy      to check syntax errors of document sources"

.PHONY: clean

clean:

	rm -rf $(BUILDDIR)/*

.PHONY: html

html:

	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."

.PHONY: dirhtml

dirhtml:

	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."

.PHONY: singlehtml

singlehtml:

	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml

	@echo

	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."

.PHONY: pickle

pickle:

	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle

	@echo

	@echo "Build finished; now you can process the pickle files."

.PHONY: json

json:

	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json

	@echo

	@echo "Build finished; now you can process the JSON files."

.PHONY: htmlhelp

htmlhelp:

	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp

	@echo

	@echo "Build finished; now you can run HTML Help Workshop with the" \

	      ".hhp project file in $(BUILDDIR)/htmlhelp."

.PHONY: qthelp

qthelp:

	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp

	@echo

	@echo "Build finished; now you can run "qcollectiongenerator" with the" \

	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"

	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/PlanetaryIO.qhcp"

	@echo "To view the help file:"

	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/PlanetaryIO.qhc"

.PHONY: applehelp

applehelp:

	$(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp

	@echo

	@echo "Build finished. The help book is in $(BUILDDIR)/applehelp."

	@echo "N.B. You won't be able to view it unless you put it in" \

	      "~/Library/Documentation/Help or install it in your application" \

	      "bundle."

.PHONY: devhelp

devhelp:

	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp

	@echo

	@echo "Build finished."

	@echo "To view the help file:"

	@echo "# mkdir -p $$HOME/.local/share/devhelp/PlanetaryIO"

	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/PlanetaryIO"

	@echo "# devhelp"

.PHONY: epub

epub:

	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub

	@echo

	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."

.PHONY: epub3

epub3:

	$(SPHINXBUILD) -b epub3 $(ALLSPHINXOPTS) $(BUILDDIR)/epub3

	@echo

	@echo "Build finished. The epub3 file is in $(BUILDDIR)/epub3."

.PHONY: latex

latex:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo

	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."

	@echo "Run \`make' in that directory to run these through (pdf)latex" \

	      "(use \`make latexpdf' here to do that automatically)."

.PHONY: latexpdf

latexpdf:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through pdflatex..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

.PHONY: latexpdfja

latexpdfja:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through platex and dvipdfmx..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

.PHONY: text

text:

	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text

	@echo

	@echo "Build finished. The text files are in $(BUILDDIR)/text."

.PHONY: man

man:

	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man

	@echo

	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."

.PHONY: texinfo

texinfo:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo

	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."

	@echo "Run \`make' in that directory to run these through makeinfo" \

	      "(use \`make info' here to do that automatically)."

.PHONY: info

info:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo "Running Texinfo files through makeinfo..."

	make -C $(BUILDDIR)/texinfo info

	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."

.PHONY: gettext

gettext:

	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale

	@echo

	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."

.PHONY: changes

changes:

	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes

	@echo

	@echo "The overview file is in $(BUILDDIR)/changes."

.PHONY: linkcheck

linkcheck:

	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck

	@echo

	@echo "Link check complete; look for any errors in the above output " \

	      "or in $(BUILDDIR)/linkcheck/output.txt."

.PHONY: doctest

doctest:

	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest

	@echo "Testing of doctests in the sources finished, look at the " \

	      "results in $(BUILDDIR)/doctest/output.txt."

.PHONY: coverage

coverage:

	$(SPHINXBUILD) -b coverage $(ALLSPHINXOPTS) $(BUILDDIR)/coverage

	@echo "Testing of coverage in the sources finished, look at the " \

	      "results in $(BUILDDIR)/coverage/python.txt."

.PHONY: xml

xml:

	$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml

	@echo

	@echo "Build finished. The XML files are in $(BUILDDIR)/xml."

.PHONY: pseudoxml

pseudoxml:

	$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml

	@echo

	@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."

.PHONY: dummy

dummy:

	$(SPHINXBUILD) -b dummy $(ALLSPHINXOPTS) $(BUILDDIR)/dummy

	@echo

	@echo "Build finished. Dummy builder generates no files."