Updates to the GPF reader/writer (#21) (09b691dc) · Commits · aflab / astrogeology / Plio

plio/examples/SocetGXP/out_InSightE08_XW.gpf

deleted100644 → 0

+0 −803

Original line number	Diff line number	Diff line
		GROUND POINT FILE
		160
		point_id,stat,known,lat_Y_North,long_X_East,ht,sig(3),res(3)
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		3 1 1
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		5 1 1
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		7 1 1
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plio/io/.ipynb_checkpoints/Untitled-checkpoint.ipynb

deleted100644 → 0

+0 −0

Original line number	Diff line number	Diff line

plio/io/io_gpf.py

+7 −7

Original line number	Diff line number	Diff line
		@@ -85,4 +85,4 @@ def save_gpf(df, output_file):
		outGPF.write('{0} {1} {2}\n\n'.format(row['res0'], row['res1'], row['res2']))

		outGPF.close()
		return 0
		return

plio/io/tests/test_gpf.py→plio/io/tests/test_io_gpf.py

+45 −0

Original line number	Diff line number	Diff line
		@@ -6,17 +6,12 @@ from plio.io.io_gpf import read_gpf
		from plio.io.io_gpf import save_gpf
		from plio.examples import get_path

		import filecmp
		import pytest

		@pytest.fixture

		def insight_gpf():
		return get_path('InSightE08_XW.gpf')

		def out_insight_gpf():
		return get_path('out_InSightE08_XW.gpf')

		@pytest.fixture()
		def insight_expected():
		return pd.read_csv(get_path('InSightE08_XW.csv'))
		@@ -26,9 +21,25 @@ def test_read_gfp(gpf, expected):
		df = read_gpf(gpf)
		assert_frame_equal(df, expected)

		@pytest.mark.parametrize('gpf, out_gpf', [(insight_gpf(),out_insight_gpf())])
		def test_write_gfp(gpf, out_gpf):
		@pytest.mark.parametrize('gpf', [(insight_gpf())])
		def test_write_gpf(gpf):
		"""
		We test by manually comparing files and not using filecmp so that we
		are not testing float point precision differences, e.g. 0.0 == 0.00000000.
		"""
		df = read_gpf(gpf)
		val = save_gpf(df, out_gpf)
		assertTrue(filecmp.cmp(gpf, out_gpf, shallow=True), "save_gpf does not create an equal file.")
		save_gpf(df, 'out.gpf')

		with open(gpf) as f:
		fl = f.readlines()

		with open('out.gpf') as f:
		fs = f.readlines()

		# Check that the header is the same
		for i in range(3):
		assert fl[i] == fs[i]

		truth_arr = np.genfromtxt(gpf, skip_header=3)
		test_arr = np.genfromtxt('out.gpf', skip_header=3)
		np.testing.assert_array_almost_equal(truth_arr, test_arr)