Commit ef20a822 authored by Tyler Thatcher's avatar Tyler Thatcher Committed by Jesse Mapel
Browse files

MEX Drivers and Tests (#297) 

* First round of changes for mex test.

* Updatd mex test and refactored image reading code.

* Merged testing and refactored code.

* First round of changes based off of comments.

* Updated tests to use load function.

* Updated method documentation for reading the image data.

* Fixed typo and removed unused imports.

* Driver for MEX and Tests for MEX Driver

* Address review comments, part one - testing push to branch

* Update testing re: comments and hopefully fix failing tests

* Added documentation to new properties and removed isis_bytes property as it was unused.

* Add parent instrument_id check
parent 8c996b08

ale/drivers/mex_drivers.py

+222 −59
Original line number Original line Diff line number Diff line
@@ -9,8 +9,11 @@ import spiceypy as spice 
import warnings

import warnings





from ale.base import Driver

from ale.base import Driver

from ale.base.data_isis import read_table_data

from ale.base.data_isis import parse_table

from ale.base.data_naif import NaifSpice

from ale.base.data_naif import NaifSpice

from ale.base.label_pds3 import Pds3Label

from ale.base.label_pds3 import Pds3Label

from ale.base.label_isis import IsisLabel

from ale.base.type_sensor import LineScanner

from ale.base.type_sensor import LineScanner

from ale.base.type_distortion import RadialDistortion

from ale.base.type_distortion import RadialDistortion

from ale.util import find_latest_metakernel

from ale.util import find_latest_metakernel
@@ -130,7 +133,7 @@ class MexHrscPds3NaifSpiceDriver(LineScanner, Pds3Label, NaifSpice, RadialDistor 
        : int

        : int

          Naif ID code used in calculating focal length

          Naif ID code used in calculating focal length

        """

        """

        return spice.bods2c(self.label['DETECTOR_ID'])

        return spice.bods2c(self.instrument_id)









    # TODO Since HRSC has different frames based on filters, need to check that

    # TODO Since HRSC has different frames based on filters, need to check that
@@ -164,6 +167,8 @@ class MexHrscPds3NaifSpiceDriver(LineScanner, Pds3Label, NaifSpice, RadialDistor 
        : str

        : str

          Short name of the instrument

          Short name of the instrument

        """

        """

        if(super().instrument_id != "HRSC"):

            raise Exception ("Instrument ID is wrong.")

        return self.label['DETECTOR_ID']

        return self.label['DETECTOR_ID']
@@ -323,30 +328,88 @@ class MexHrscPds3NaifSpiceDriver(LineScanner, Pds3Label, NaifSpice, RadialDistor 
        """

        """

        Returns a 2D array of line scan rates.

        Returns a 2D array of line scan rates.





        For HRSC, this data is actually imbedded in the binary data of the image

        For HRSC, the ephemeris times and exposure durations are

        itself. Each line is stored in what is referred to as a "record" within

        stored in the image data.

        the image. The label will have the size of each record, the number of

        records, and the number of records in the label, so the beginning of

        binary data can be calculated.





        For each line/record of the binary data, the first 8 bytes make up the

        Returns

        double presicion value of the ephemeris time, with the next 4 bytes

        -------

        making up the float value of the line exposure duration for the

        : list

        associated line. NOTE: The image label specifies MSB_INTEGER as the byte

          Line scan rates

        order, however, to match ISIS values, we used python struct's little

        """

        endian functionality.

        times = [time - self.center_ephemeris_time for time in self.binary_ephemeris_times]

        return (self.binary_lines, times, self.binary_exposure_durations)





    @property

    def binary_exposure_durations(self):

        """

        Returns the exposure durations taken from the binary image data.



        For HRSC, the exposure durations are imbedded in the binary data of the image.

        The expsoure durations start at the 9th byte of the line/record and are 4 bytes long.





        Returns

        Returns

        -------

        -------

        : list

        : list

          Start lines

          Exposure durations

        """

        if not hasattr(self, '_binary_exposure_durations'):

            self.read_image_data()

        return self._binary_exposure_durations





    @property

    def binary_ephemeris_times(self):

        """

        Returns the ephemeris times taken from the binary image data.



        For HRSC, the ephemeris times are imbedded in the binary data of the image.

        The ephemeris times start at the first byte of the line/records and are 8 bytes long.



        Returns

        -------

        : list

        : list

          Line times

          Ephemeris times

        """

        if not hasattr(self, '_binary_ephemeris_times'):

            self.read_image_data()

        return self._binary_ephemeris_times





    @property

    def binary_lines(self):

        """

        Returns the lines of the binary image data.



        For example, the first entry would be the first line of the image.



        Returns

        -------

        : list

        : list

          Exposure durations

          Image lines

        """

        if not hasattr(self, '_binary_lines'):

            self.read_image_data()

        return self._binary_lines





    def read_image_data(self):

        """

        Reads data off of image and stores in binary_exposure_durations, binary_lines,

        and binary_ephemeris_times.



        For HRSC, the exposure durations and ephemeris times are imbedded in the binary

        data of the image itself. Each line is stored in what is referred to as a

        "record" within the image. The label will have the size of each record,

        the number of records, and the number of records in the label, so the

        beginning of binary data can be calculated.



        For each line/record of the binary data, the first 8 bytes make up the

        double presicion value of the ephemeris time, with the next 4 bytes

        making up the float value of the line exposure duration for the

        associated line. NOTE: The prefix data is always LSB, regardless

        of the overall file format.

        """

        """

        if not hasattr(self, '_line_scan_rate'):

            self._line_scan_rate = None

        lines = []

        lines = []

        times = []

        times = []

        durations = []

        durations = []
@@ -363,35 +426,30 @@ class MexHrscPds3NaifSpiceDriver(LineScanner, Pds3Label, NaifSpice, RadialDistor 
                record_bytes = image_file.read(bytes_per_record)

                record_bytes = image_file.read(bytes_per_record)

                eph_time = struct.unpack('<d', record_bytes[:8])[0]

                eph_time = struct.unpack('<d', record_bytes[:8])[0]

                exp_dur = struct.unpack('<f', record_bytes[8:12])[0] / 1000

                exp_dur = struct.unpack('<f', record_bytes[8:12])[0] / 1000

                    #if record == 0:

                # Offset for zero-based corrections, and then offest for ISIS pixel definition

                # Offset for zero-based corrections, and then offest for ISIS pixel definition

                lines.append(record+1-0.5)

                lines.append(record+1-0.5)

                times.append(eph_time)

                times.append(eph_time)

                durations.append(exp_dur)

                durations.append(exp_dur)

                # Only add records if exposure duration has changed since the line before



                    #elif exp_dur != durations[-1]:

        self._binary_exposure_durations = durations

                    #    # Offset for zero-based corrections, and then offest for ISIS pixel definition

        self._binary_lines = lines

                    #    lines.append(record+1-0.5)

        self._binary_ephemeris_times = times

                    #    times.append(eph_time)



                    #    durations.append(exp_dur)

            self._ephemeris_stop_time = times[-1] + durations[-1]

            self._center_ephemeris_time = (self.ephemeris_stop_time + self.ephemeris_start_time) / 2

            times = [time - self.center_ephemeris_time for time in times]

            # print(self.ephemeris_stop_time, self.center_ephemeris_time)



            self._line_scan_rate = (lines, times, durations)

        return self._line_scan_rate

    @property

    def center_ephemeris_time(self):

        if not hasattr(self, '_center_ephemeris_time'):

            self._center_ephemeris_time = (self.ephemeris_stop_time - self._ephemeris_start_time) / 2

        return self._center_ephemeris_time





    @property

    @property

    def ephemeris_stop_time(self):

    def ephemeris_stop_time(self):

        if not hasattr(self, '_ephemeris_stop_time'):

        """

            _, _, _ = self.line_scan_rate

        Returns the ephemeris stop time.

        return self._ephemeris_stop_time



        For HRSC, the ephemeris stop time is calculated from the binary image data.



        Returns

        -------

        : float

          Ephemeris stop time

        """

        return self.binary_ephemeris_times[-1] + self.binary_exposure_durations[-1]







    # TODO We need to confirm that returning nothing here does not affect

    # TODO We need to confirm that returning nothing here does not affect

    # calculations elsewhere in code. Or is there possibly just a better way of

    # calculations elsewhere in code. Or is there possibly just a better way of
@@ -422,3 +480,108 @@ class MexHrscPds3NaifSpiceDriver(LineScanner, Pds3Label, NaifSpice, RadialDistor 
          ISIS sensor model version

          ISIS sensor model version

        """

        """

        return 1

        return 1



class MexHrscIsisLabelNaifSpiceDriver(LineScanner, IsisLabel, NaifSpice, RadialDistortion, Driver):



        @property

        def instrument_id(self):

            """

            Returns the name of the instrument



            Returns

            -------

            : str

              Name of the instrument

            """

            if(super().instrument_id != "HRSC"):

                raise Exception ("Instrument ID is wrong.")



            return super().instrument_id



        @property

        def sensor_model_version(self):

            """

            Returns

            -------

            : int

              ISIS sensor model version

            """

            return 1



        @property

        def times_table(self):

            """

            Returns EphermisTime, ExposureTime, and LinesStart informtation which was stored as 

            binary information in the ISIS cube.



            Returns

            -------

            : dict

              Dictionary with EphemerisTime, ExposureTime, and LineStart.

            """

            isis_bytes = read_table_data(self.label['Table'], self._file)

            return parse_table(self.label['Table'], isis_bytes)



        @property

        def line_scan_rate(self):

            """

            Returns

            -------

            : tuple

              list of lines, list of ephemeris times, and list of exposure

              times

            """

            return self.times_table['LineStart'], self.times_table['EphemerisTime'], self.times_table['ExposureTime']



        @property

        def ephemeris_start_time(self):

            """

            Returns

            -------

            : float

              starting ephemeris time

            """

            return self.times_table['EphemerisTime'][0]



        @property

        def ephemeris_stop_time(self):

            """

            Returns

            -------

            : float

              ephemeris stop time

            """

            last_line = self.times_table['LineStart'][-1]

            return self.times_table['EphemerisTime'][-1] + ((self.image_lines - last_line + 1) * self.times_table['ExposureTime'][-1])



        @property

        def ikid(self):

            """

            Returns the Naif ID code for the HRSC head instrument



            This would be the Naif ID code for the base (or "head") instrument.



            Returns

            -------

            : int

              Naif ID used to for indentifying the instrument in Spice kernels

            """

            return spice.bods2c("MEX_HRSC_HEAD")





        @property

        def fikid(self):

            """

            Naif ID code of the filter dependent instrument codes.



            Expects filter_number to be defined. This should be an integer containing

            the filter number from the pds3 label.

            Expects ikid to be defined. This should be the integer Naid ID code for

            the instrument.



            Returns

            -------

            : int

              Naif ID code used in calculating focal length

            """

            return spice.bods2c(self.instrument_id)

bin/change_mk_data_path.py

+1 −1
Original line number Original line Diff line number Diff line
@@ -10,7 +10,7 @@ parser.add_argument('mk_path', action='store', help='Path containing metakernel 
parser.add_argument('new_data_path', action='store', help='new data path containing kernel, this path will overwrite the current data path in the metakernels')

parser.add_argument('new_data_path', action='store', help='new data path containing kernel, this path will overwrite the current data path in the metakernels')

args = parser.parse_args()

args = parser.parse_args()





mks = glob(path.join(args.mk_path,'*.tm'))

mks = glob(path.join(args.mk_path,'*.[Tt][Mm]'))





for mk in mks:

for mk in mks:

    with open(mk, 'r') as f:

    with open(mk, 'r') as f:

tests/pytests/data/h5270_0000_ir2/ATNM_MEASURED_080101_090101_V03_0_sliced_-41001.xc

0 → 100644
+320 −0
Original line number Original line Diff line number Diff line 
DAFETF NAIF DAF ENCODED TRANSFER FILE

'DAF/CK  '

'2'

'6'

'MEX CK; MEASURED; OBTAINED FROM TELEMETRY                   '

BEGIN_ARRAY 1 299

'MEX MEASURED ATTITUDE                   '

'8D09944AC2A^B'

'8D09A5CD464^B'

'-A029'

'1'

'3'

'1'

299

'195CA1F16184AC^0'

'-8FB78691C24E78^0'

'B5DB15946D13D^0'

'69AC2FB182E918^0'

'113D090CB55617^-2'

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END_ARRAY 1 299

TOTAL_ARRAYS 1

 ~NAIF/SPC BEGIN COMMENTS~

This CK is for testing with the image: /home/kdlee/builds/ale/tests/pytests/data/h5270_0000_ir2/h5270_0000_ir2.cub



This CK was generated using the following command: {}

 ~NAIF/SPC END COMMENTS~

tests/pytests/data/h5270_0000_ir2/ATNM_MEASURED_080101_090101_V03_1_sliced_-41001.xc

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DAFETF NAIF DAF ENCODED TRANSFER FILE

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END_ARRAY 1 291

TOTAL_ARRAYS 1

 ~NAIF/SPC BEGIN COMMENTS~

This CK is for testing with the image: /home/kdlee/builds/ale/tests/pytests/data/h5270_0000_ir2/h5270_0000_ir2.cub



This CK was generated using the following command: {}

 ~NAIF/SPC END COMMENTS~

tests/pytests/data/h5270_0000_ir2/MEX_190911_STEP.TSC

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