Update .gitlab-ci.yml

image: continuumio/miniconda3:latest

stages:          # List of stages for jobs, and their order of execution

  - build

  - test

variables:

    SSPICE_DEBUG : y

clone_github:

    stage: deploy 

    image: ubuntu:18.04

    before_script:

    - conda init bash

    - source ~/.bashrc

build-and-ctest:       # This job runs in the build stage, which runs first.

  variables:

    SSPICE_DEBUG : y

    BUILD_TYPE : Release

  stage: build

  tags:

  - dind

  script:

    - ls $CI_PROJECT_DIR

    - git config http.sslVerify "false"

    - git config --global url."https://github.com/".insteadOf "git@github.com:"

    - git config --global url."https://".insteadOf git://

    - GIT_SSL_NO_VERIFY=true git submodule update --init --recursive

    - touch /etc/pip.conf

    - echo -e "[global]\n

                trusted-host = pypi.python.org\n

                    \tpypi.org\n

                    \tfiles.pythonhosted.org" >> /etc/pip.conf

    - cat /etc/pip.conf

    - SSL_NO_VERIFY=1 conda env create -f environment.yml --prefix $CI_PROJECT_DIR/env

    - conda init bash

    - source ~/.bashrc

    - conda activate $CI_PROJECT_DIR/env

    - SSL_NO_VERIFY=1 conda install make gcc_linux-64 gxx_linux-64  pthread-stubs

    - conda info 

    - conda list

    - cmake -E make_directory $CI_PROJECT_DIR/build

    - cmake -E make_directory $CI_PROJECT_DIR/install

    - cd $CI_PROJECT_DIR/build/

    - cmake $CI_PROJECT_DIR -DCSpice_DIR=$CONDA_PREFIX/lib/cmake/cspice/ -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DSPICEQL_BUILD_DOCS=OFF -DCMAKE_INSTALL_PREFIX=$CI_PROJECT_DIR/install

    - cmake --build . 

    - cmake --install . 

    - echo "Running unit tests... This will take about 60 seconds."

    - cd $CI_PROJECT_DIR/build/

    - ctest -VV -C $BUILD_TYPE

  artifacts:

    paths:

      - $CI_PROJECT_DIR/build

      - $CI_PROJECT_DIR/install

check-install-binaries:   # This job also runs in the test stage.

  stage: test    # It can run at the same time as unit-test-job (in parallel).

  tags:

  - dind

  dependencies:

    - build-and-ctest

  script:

    - cd $CI_PROJECT_DIR/install/

    - test -e lib/libSpiceQL.so

    - test -e include/SpiceQL/spiceql.h

check-installed-json-files:

  stage: test

  tags:

  - dind

  dependencies:

    - build-and-ctest

        - apt-get update -y && apt-get install openssh-client -y

        - apt install git -y

        - eval $(ssh-agent -s)

        - echo "$GIT_SSH_PRIVATE_KEY" | openssl base64 -A -d | ssh-add -

        - mkdir -p ~/.ssh

        - chmod 700 ~/.ssh

        - ssh-keyscan $GIT_LAB_HOST >> ~/.ssh/known_hosts

        - chmod 644 ~/.ssh/known_hosts

        - git config --global user.name "krodriguez"

        - git config --global user.email "krodriguez@usgs.gov"

        - ssh "git@$GIT_LAB_HOST"

    script:

    - cd $CI_PROJECT_DIR/install

    - pip install --trusted-host pypi.org --trusted-host pypi.python.org --trusted-host files.pythonhosted.org jsonschema

    - cd $CI_PROJECT_DIR/SpiceQL/db

    - | 

      for file in *.json;

          do

          pwd

          jsonschema --instance "$file" schema/spiceMissionSchmea.schema.json 

      done;

# clone_github:

#     stage: deploy 

#     image: ubuntu:18.04

#     before_script:

#         - apt-get update -y && apt-get install openssh-client -y

#         - apt install git -y

#         - eval $(ssh-agent -s)

#         - echo "$GIT_SSH_PRIVATE_KEY" | openssl base64 -A -d | ssh-add -

#         - mkdir -p ~/.ssh

#         - chmod 700 ~/.ssh

#         - ssh-keyscan $GIT_LAB_HOST >> ~/.ssh/known_hosts

#         - chmod 644 ~/.ssh/known_hosts

#         - git config --global user.name "krodriguez"

#         - git config --global user.email "krodriguez@usgs.gov"

#         - ssh "git@$GIT_LAB_HOST"

#     script:

#         - echo $SOURCE_REPOSITORY

#         - git config --global http.sslVerify false

#         - rm -rf spiceql  # Needed to allow multiple CI runs

#         - git config --global user.name "krodriguez"

#         - git config --global user.email "krodriguez@usgs.gov"

#         - git clone --mirror https://github.com/DOI-USGS/SpiceQL.git spiceql

#         - cd spiceql

#         - git remote remove origin

#         - git remote add origin $DESTINATION_REPOSITORY

#         - git push -f --prune --all

#         - git push -f --prune --tags

#     only:

#         - branches

        - echo $SOURCE_REPOSITORY

        - git config --global http.sslVerify false

        - rm -rf spiceql  # Needed to allow multiple CI runs

        - git config --global user.name "krodriguez"

        - git config --global user.email "krodriguez@usgs.gov"

        - git clone --mirror https://github.com/DOI-USGS/SpiceQL.git spiceql

        - cd spiceql

        - git remote remove origin

        - git remote add origin $DESTINATION_REPOSITORY

        - git push -f --prune --all

        - git push -f --prune --tags

    only:

        - branches