Unverified Commit c9083b2d authored by Tim Giroux's avatar Tim Giroux Committed by GitHub
Browse files

Findgaps gtests (#4422) 

* first few test cases, needs work

* two working tests

* add test for correlation tolerance

* improve test data creation code
parent 55f47979

isis/src/base/apps/findgaps/findgaps.cpp

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/**

 * @file

 * $Revision: 1.19 $

 * $Date: 2010/03/22 19:44:53 $

 *

 *   Unless noted otherwise, the portions of Isis written by the USGS are

 *   public domain. See individual third-party library and package descriptions

 *   for intellectual property information, user agreements, and related

 *   information.

 *

 *   Although Isis has been used by the USGS, no warranty, expressed or

 *   implied, is made by the USGS as to the accuracy and functioning of such

 *   software and related material nor shall the fact of distribution

 *   constitute any such warranty, and no responsibility is assumed by the

 *   USGS in connection therewith.

 *

 *   For additional information, launch

 *   $ISISROOT/doc//documents/Disclaimers/Disclaimers.html

 *   in a browser or see the Privacy & Disclaimers page on the Isis website,

 *   http://isis.astrogeology.usgs.gov, and the USGS privacy and disclaimers on

 *   http://www.usgs.gov/privacy.html.

 */

#include <QMessageBox>



#include "FindGapsFunctor.h"

#include "IException.h"

#include "IString.h"

#include "MultivariateStatistics.h"

#include "ProcessByLine.h"

#include "ProcessBySample.h"

#include "SpecialPixel.h"

#include "Statistics.h"

#include "findgaps.h"



using namespace std;



namespace Isis {



  void findgaps(UserInterface &ui) {

    double corTol = ui.GetDouble("CORTOL"); // The correlation tolerance

    int bufferSizeBeforeGap = ui.GetInteger("ABOVE");

    int bufferSizeAfterGap = ui.GetInteger("BELOW");

    bool outputCubeSpecified = (ui.GetAsString("TO") != "none");

    bool logFileSpecified = (ui.GetAsString("LOG") != "none");



    CubeAttributeOutput &att = ui.GetOutputAttribute("TO");



    Cube *iCube = new Cube();

    iCube->open(ui.GetFileName("FROM"), "r");



    if (outputCubeSpecified || logFileSpecified) {

      ProcessByLine p;

      p.SetInputCube(iCube);



      FindGapsFunctor gapsFunctor(iCube->lineCount(), corTol, bufferSizeBeforeGap,

                                  bufferSizeAfterGap);

      p.ProcessCubeInPlace(gapsFunctor, false);



      if (outputCubeSpecified) {

        gapsFunctor.setModification("NULL buffers added to output cube");

        

        p.SetOutputCube(ui.GetFileName("TO"), att);



        p.ProcessCube(gapsFunctor, false);

      }



      if (logFileSpecified) {

        gapsFunctor.gaps().write(ui.GetFileName("LOG"));

      }

    }

    else {

      throw IException(IException::User,

                      "At least one form of output (a log file or cube) needs to be entered.",

                      _FILEINFO_);

    }

  }

}
 
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isis/src/base/apps/findgaps/findgaps.h

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#ifndef findgaps_h

#define findgaps_h



/** This is free and unencumbered software released into the public domain.



The authors of ISIS do not claim copyright on the contents of this file.

For more details about the LICENSE terms and the AUTHORS, you will

find files of those names at the top level of this repository. **/



/* SPDX-License-Identifier: CC0-1.0 */



#include "UserInterface.h"



namespace Isis{

  extern void findgaps(UserInterface &ui);

}



#endif

isis/src/base/apps/findgaps/main.cpp

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/**

 * @file

 * $Revision: 1.19 $

 * $Date: 2010/03/22 19:44:53 $

 *

 *   Unless noted otherwise, the portions of Isis written by the USGS are

 *   public domain. See individual third-party library and package descriptions

 *   for intellectual property information, user agreements, and related

 *   information.

 *

 *   Although Isis has been used by the USGS, no warranty, expressed or

 *   implied, is made by the USGS as to the accuracy and functioning of such

 *   software and related material nor shall the fact of distribution

 *   constitute any such warranty, and no responsibility is assumed by the

 *   USGS in connection therewith.

 *

 *   For additional information, launch

 *   $ISISROOT/doc//documents/Disclaimers/Disclaimers.html

 *   in a browser or see the Privacy &amp; Disclaimers page on the Isis website,

 *   http://isis.astrogeology.usgs.gov, and the USGS privacy and disclaimers on

 *   http://www.usgs.gov/privacy.html.

 */

/** This is free and unencumbered software released into the public domain.



#include "Isis.h"

The authors of ISIS do not claim copyright on the contents of this file.

For more details about the LICENSE terms and the AUTHORS, you will

find files of those names at the top level of this repository. **/



#include <QMessageBox>

/* SPDX-License-Identifier: CC0-1.0 */



#include "FindGapsFunctor.h"

#include "IException.h"

#include "IString.h"

#include "MultivariateStatistics.h"

#include "ProcessByLine.h"

#include "ProcessBySample.h"

#include "SpecialPixel.h"

#include "Statistics.h"

#include "Isis.h"

#include "findgaps.h"

#include "Application.h"



using namespace std;

using namespace Isis;



void IsisMain() {



  UserInterface &ui = Application::GetUserInterface();

  double corTol = ui.GetDouble("CORTOL"); // The correlation tolerance

  int bufferSizeBeforeGap = ui.GetInteger("ABOVE");

  int bufferSizeAfterGap = ui.GetInteger("BELOW");

  bool outputCubeSpecified = (ui.GetAsString("TO") != "none");

  bool logFileSpecified = (ui.GetAsString("LOG") != "none");



  if (outputCubeSpecified || logFileSpecified) {

    ProcessByLine p;

    Cube *iCube = p.SetInputCube("FROM");



    FindGapsFunctor gapsFunctor(iCube->lineCount(), corTol, bufferSizeBeforeGap,

                                bufferSizeAfterGap);

    p.ProcessCubeInPlace(gapsFunctor, false);



    if (outputCubeSpecified) {

      gapsFunctor.setModification("NULL buffers added to output cube");

      p.SetOutputCube("TO");

      p.ProcessCube(gapsFunctor, false);

    }



    if (logFileSpecified) {

      gapsFunctor.gaps().write(ui.GetFileName("LOG"));

    }

  }

  else {

    throw IException(IException::User,

                     "At least one form of output (a log file or cube) needs to be entered.",

                     _FILEINFO_);

  }

  findgaps(ui);

}

isis/src/base/apps/findgaps/tsts/Makefile

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BLANKS = "%-6s"    

LENGTH = "%-40s"



include $(ISISROOT)/make/isismake.tststree

isis/src/base/apps/findgaps/tsts/default/Makefile

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APPNAME = findgaps



include $(ISISROOT)/make/isismake.tsts



# Test 1 - The output cube and the buffer sizes are set to their default values.

# Test 2 - The log file and the buffer sizes are set to their default values.



commands:

	$(APPNAME) from=$(INPUT)/findGapsTest_basedOnI02025005RDR.cub \

	  log=$(OUTPUT)/cubeIsDefaultLogResults.pvl                   \

	  > /dev/null;                                                \

	                                                              \

	$(APPNAME) from=$(INPUT)/findGapsTest_basedOnI02025005RDR.cub \

	  to=$(OUTPUT)/pvlIsDefaultCubeResults.cub                    \

	  > /dev/null;