Merge pull request #181 from SgStapleton/cassisProjectionFlow

# This tests the workflow of ingesting raw CaSSIS data, spiceiniting, projecting, exporting and

# reingesting. 

#

# @history 2018-05-17 Summer Stapleton - Original version, many things borrowed from 

#                             singleFrameletProjection cat test. 

#

INGEST = tgocassis2isis

SPICE = spiceinit

MAP = mosrange

PROJECT = cam2map

EXPORT = tgocassisrdrgen

CATLAB = catlab

include $(ISISROOT)/make/isismake.tsts

commands:

	$(LS) $(INPUT)/*.xml > $(OUTPUT)/inputs.lis;

	$(SED) 's/^.*input\///g' $(OUTPUT)/inputs.lis > $(OUTPUT)/relative.lis;

	$(SED) 's/\.xml//g' $(OUTPUT)/relative.lis > $(OUTPUT)/basenames.lis;

	$(INGEST) $(TSTARGS) from=$(INPUT)/$\$$\1.xml \

            to=$(OUTPUT)/$\$$\1.cub -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	$(SPICE) $(TSTARGS) from=$(OUTPUT)/$\$$\1.cub \

           SPKPREDICTED=true CKPREDICTED=true -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	$(LS) $(OUTPUT)/*.cub > $(OUTPUT)/cubes.lis;

	$(MAP) $(TSTARGS) fromlist=$(OUTPUT)/cubes.lis to=$(OUTPUT)/equi.map	> /dev/null;

	$(PROJECT) $(TSTARGS) from=$(OUTPUT)/$\$$\1.cub to=$(OUTPUT)/$\$$\1_equi.cub \

             map=$(OUTPUT)/equi.map \

             pixres=mpp resolution=200 -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	$(EXPORT) $(TSTARGS) from=$(OUTPUT)/$\$$\1_equi.cub \

            to=$(OUTPUT)/$\$$\1_equi.img -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	$(INGEST) $(TSTARGS) from=$(OUTPUT)/$\$$\1_equi.xml \

						to=$(OUTPUT)/$\$$\1_reingested.cub -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	$(CATLAB) from=$(OUTPUT)/$\$$\1_equi.cub \

	       		to=$(OUTPUT)/labels.pvl -batchlist=$(OUTPUT)/basenames.lis > /dev/null;

	for label in `ls $(OUTPUT)/*.xml`; do \

	  $(SED) 's+\Product_Observational.*>+\Product_Observational>+' \

           $$label > $${label%.xml}1.txt; \

	  $(SED) 's+\FSW_HEADER.*>+\FSW_HEADER>+' \

           $${label%.xml}1.txt > $${label%.xml}2.txt; \

	  $(SED) 's+\PEHK_HEADER.*>+\PEHK_HEADER>+' \

           $${label%.xml}2.txt > $${label%.xml}3.txt; \

	  $(SED) 's+\Modification_Detail.*>+\Modification_Detail>+' \

           $${label%.xml}3.txt > $${label%.xml}.txt; \

	  $(RM) $$label; \

	  $(RM) $${label%.xml}1.txt; \

	  $(RM) $${label%.xml}2.txt; \

	  $(RM) $${label%.xml}3.txt; \

	done;

	$(RM) $(OUTPUT)/*.lis

	$(RM) $(OUTPUT)/*equi*

	$(RM) $(OUTPUT)/*B1.cub