first copypasta for python binding support

*/tsts/*/output/*

*/build/

*/install/

# Created by https://www.gitignore.io/api/c++

### C++ ###

# Prerequisites

*.d

*.cpp

*.c

*.hpp

*.sbf

# Compiled Object files

*.slo

*.lo

*.o

*.obj

# Precompiled Headers

*.gch

*.pch

# Compiled Dynamic libraries

*.so

*.dylib

*.dll

# Fortran module files

*.mod

*.smod

# Compiled Static libraries

*.lai

*.la

*.a

*.lib

# Executables

*.exe

*.out

*.app

# Created by https://www.gitignore.io/api/osx

### OSX ###

*.DS_Store

.AppleDouble

.LSOverride

# Icon must end with two \r

Icon

# Thumbnails

._*

# Files that might appear in the root of a volume

.DocumentRevisions-V100

.fseventsd

.Spotlight-V100

.TemporaryItems

.Trashes

.VolumeIcon.icns

.com.apple.timemachine.donotpresent

# Directories potentially created on remote AFP share

.AppleDB

.AppleDesktop

Network Trash Folder

Temporary Items

.apdisk

# Created by https://www.gitignore.io/api/python

### Python ###

# Byte-compiled / optimized / DLL files

__pycache__/

*.py[cod]

*$py.class

# C extensions

*.so

# Distribution / packaging

.Python

env/

build/

develop-eggs/

dist/

downloads/

eggs/

.eggs/

lib/

lib64/

parts/

sdist/

var/

*.egg-info/

.installed.cfg

*.egg

# PyInstaller

#  Usually these files are written by a python script from a template

#  before PyInstaller builds the exe, so as to inject date/other infos into it.

*.manifest

*.spec

# Installer logs

pip-log.txt

pip-delete-this-directory.txt

# Unit test / coverage reports

htmlcov/

.tox/

.coverage

.coverage.*

.cache

nosetests.xml

coverage.xml

*,cover

.hypothesis/

# Translations

*.mo

*.pot

# Django stuff:

*.log

local_settings.py

# Flask stuff:

instance/

.webassets-cache

# Scrapy stuff:

.scrapy

# Sphinx documentation

docs/_build/

# PyBuilder

target/

# Jupyter Notebook

.ipynb_checkpoints

# pyenv

.python-version

# celery beat schedule file

celerybeat-schedule

# dotenv

.env

# virtualenv

.venv/

venv/

ENV/

# Spyder project settings

.spyderproject

# Rope project settings

.ropeproject

import os

import sys

import sipconfig

import sipdistutils

import PyQt5

import subprocess

import argparse

from os.path import splitext

from os.path import dirname

from glob import glob

from distutils.spawn import find_executable

from PyQt5.QtCore import PYQT_CONFIGURATION

from plio.utils.utils import find_in_dict

from PyQt5.QtCore import PYQT_CONFIGURATION as qtconfigdict

from sipconfig import ModuleMakefile

def main (module):

    # The name of the SIP build file generated by SIP and used by the build

    # system.

    sipy_sip_dir = "sipfiles/"

    module = sipy_sip_dir+module + '.sip'

    build_file = "bundle"+".sbf"

    target = module+".so"

    # Get the extra SIP flags needed by the imported qt module.  Note that

    # this normally only includes those flags (-x and -t) that relate to SIP's

    # versioning system.

    qt_sip_flags = qtconfigdict["sip_flags"]

    # sip_bin = current_env_path + "/bin/sip"

    sip_bin = find_executable('sip')

    pyqt_sip_dir = dirname(dirname(sip_bin)) + "/share/sip/PyQt5"

    # Get the PyQt configuration information.

    config = sipconfig.Configuration()

    # Run SIP to generate the code.  Note that we tell SIP where to find the qt

    # module's specification files using the -I flag.

    errcode = os.system(" ".join([sip_bin, "-e","-c", ".", "-b", build_file, "-I",

        pyqt_sip_dir, qt_sip_flags, module]))

    if errcode != 0:

        print('sip exited with non zero error code: {}'.format(errcode))

    # We are going to install the SIP specification file for this module and

    # its configuration module.

    installs = []

    installs.append([module, os.path.join(pyqt_sip_dir, "isis3")])

    isis_root = os.getenv("ISISROOT")

    if not isis_root:

        raise("Please set ISIS")

    extra_libs = ["$(ALLLIBS)", "-Wl,-rpath,"+isis_root+"/lib", "-Wl,-rpath,"+isis_root+"/3rdParty/lib"]

    makefile = ModuleMakefile(configuration=config, build_file=build_file, installs=installs)

    makefile.extra_cxxflags = ["$(ALLINCDIRS)", "-Wstrict-aliasing=0", "-Wno-unused-variable"]

    makefile.extra_lflags =  ["$(ALLLIBDIRS)"]

    makefile.extra_include_dirs = [x[0] for x in os.walk('incs/')]

    makefile.extra_lib_dirs = [isis_root + '/3rdParty/lib', isis_root + 'lib']

    makefile.generate()

    # add import line for isismake.os

    isis_makefile = "include " + isis_root + "/make/isismake.os"

    with open("Makefile", 'r+') as f:

        content = f.read()

        content = content.replace("LIBS =", "LIBS = " + ' '.join(extra_libs))

        f.seek(0, 0)

        f.write(isis_makefile + '\n\n' + content)

if __name__ == "__main__":

    clean = ['cpp', 'c', 'h', 'hpp', 'o', 'sbf']

    # If clean is passed in, clear up all the files genreated by the scripts

    if len(sys.argv) > 1 and sys.argv[1] == 'clean':

        files = []

        for filetype in clean:

            files.extend(glob('*.{}'.format(filetype)))

        for f in files:

            os.remove(f)

        exit()

    main('master')

// SIP Wrapper to the ISIS3 bundle class

%Include type_conversions.sip

namespace Isis {

  class BundleAdjust : public QObject {

    %TypeHeaderCode

    #include "BundleAdjust.h"

    #include "IException.h"

    %End

  public:

    BundleAdjust(PyObject* settings, const QString &cnetFile, const QString &cubeList, bool printSummary = true) throw(Isis::IException) [(QSharedPointer<Isis::BundleSettings>, QString, QString, bool)];

    %MethodCode

      int sipErr = 0;

      QSharedPointer<Isis::BundleSettings> *wrappedSettings = new QSharedPointer<Isis::BundleSettings>();

      Isis::BundleSettings *settings = (Isis::BundleSettings*) sipConvertToType(a0, sipType_Isis_BundleSettings, NULL, SIP_NOT_NONE, NULL, &sipErr);

      wrappedSettings->reset(settings);

      try {

        sipCpp = new sipIsis_BundleAdjust(*wrappedSettings, *a1, *a2, a3);

      }

      catch (Isis::IException &error) {

          PyErr_SetString(sipException_Isis_IException, error.what());

          return NULL;

      }

    %End

    Isis::BundleSolutionInfo solveCholeskyBR() throw(Isis::IException) ;

   };

};

namespace Isis {

  class BundleControlPoint {

    %TypeHeaderCode

    #include "BundleControlPoint.h"

    #include <QSharedPointer>

    %End

    public:

      SIP_PYTYPE measures() throw(Isis::IException);

      %MethodCode

        size_t size = sipCpp->size();

        PyObject *l = PyList_New(size);

        for (size_t i = 0; i < size; ++i) {

          Isis::BundleMeasure* cppMeasure = sipCpp->at(i).data();

          PyObject *pyMeasure = sipConvertFromType((void*)(cppMeasure), sipType_Isis_BundleMeasure, NULL);

          PyList_SetItem(l, i, pyMeasure);

        }

        return l;

      %End

      // BundleControlPoint(ControlPoint *point); // default constructor

      BundleControlPoint(const Isis::BundleControlPoint &src) throw(Isis::IException);

      ~BundleControlPoint();

      // copy

      void copy(const Isis::BundleControlPoint &src) throw(Isis::IException);

      // mutators

      // QSharedPointer<Isis::BundleMeasure> addMeasure(ControlMeasure *controlMeasure);

      void computeResiduals() throw(Isis::IException);

      void setNumberOfRejectedMeasures(int numRejected) throw(Isis::IException);

      void setRejected(bool reject) throw(Isis::IException);

      void setWeights(const QSharedPointer<Isis::BundleSettings> settings, double metersToRadians) throw(Isis::IException);

      void zeroNumberOfRejectedMeasures() throw(Isis::IException);

      // accessors

      bool isRejected() const throw(Isis::IException);

      int numberOfMeasures() const throw(Isis::IException);

      int numberOfRejectedMeasures() const throw(Isis::IException);

      double residualRms() const throw(Isis::IException);

      QString id() const throw(Isis::IException);

      Isis::ControlPoint::PointType type() const throw(Isis::IException);

      // string format methods

      QString formatBundleOutputSummaryString(bool errorPropagation) const throw(Isis::IException);

      QString formatBundleOutputDetailString(bool errorPropagation, double RTM, bool solveRadius=false) throw(Isis::IException) /KeywordArgs="Optional"/;

      QString formatValue(double value, int fieldWidth, int precision) throw(Isis::IException);

      QString formatAprioriSigmaString(int type, int fieldWidth, int precision, bool solveRadius=false) throw(Isis::IException) /KeywordArgs="Optional"/;

      QString formatLatitudeAprioriSigmaString(int fieldWidth, int precision) const throw(Isis::IException);

      QString formatLongitudeAprioriSigmaString(int fieldWidth, int precision) const throw(Isis::IException);

      QString formatRadiusAprioriSigmaString(int fieldWidth, int precision, bool solveRadius=false) throw(Isis::IException) /KeywordArgs="Optional"/;

      QString formatAdjustedSigmaString(int type, int fieldWidth, int precision,

                                        bool errorPropagation) const throw(Isis::IException);

      QString formatLatitudeAdjustedSigmaString(int fieldWidth, int precision,

                                                bool errorPropagation) const throw(Isis::IException);

      QString formatLongitudeAdjustedSigmaString(int fieldWidth, int precision,

                                                 bool errorPropagation) const throw(Isis::IException);

      QString formatRadiusAdjustedSigmaString(int fieldWidth, int precision,

                                              bool errorPropagation) const throw(Isis::IException);

  };

};