Checked in new application tgocassisrdrgen. Fixes # 5167

ifeq ($(ISISROOT), $(BLANK))

.SILENT:

error:

	echo "Please set ISISROOT";

else

	include $(ISISROOT)/make/isismake.apps

endif

 No newline at end of file

#include "Isis.h"

#include <QString>

#include <QDomDocument>

#include "Application.h"

#include "Cube.h"

#include "ExportDescription.h"

#include "FileName.h"

#include "Process.h"

#include "ProcessExportPds4.h"

#include "Pvl.h"

#include "PvlKeyword.h"

#include "PvlToXmlTranslationManager.h"

using namespace Isis;

using namespace std;

void IsisMain() {

  UserInterface &ui = Application::GetUserInterface();

    // Check if input file is indeed, a cube

  if (ui.GetFileName("FROM").right(3) != "cub") {

    QString msg = "Input file [" + ui.GetFileName("FROM") +

                "] does not appear to be a cube";

    throw  IException(IException::User, msg, _FILEINFO_);

  }

  // Setup the process and set the input cube

  ProcessExportPds4 p;

  Cube *icube = p.SetInputCube("FROM");

  PvlObject *label= icube->label();

  PvlKeyword &instrument = label->findObject("IsisCube").findGroup("Instrument").findKeyword("InstrumentId");

  // Check if the cube is able to be translated into a CaSSIS xml file

  // This could very well be unnecessary

  if (!instrument.isEquivalent("CaSSIS")) {

    QString msg = "Input file [" + ui.GetFileName("FROM") +

                "] does not appear to be a CaSSIS RDR product. The image" +

                "instrument is not the CaSSIS instrument";

    throw  IException(IException::User, msg, _FILEINFO_);

  }

/*

  * Add additional pds label data here

  */

  QDomDocument &pdsLabel = p.GetLabel();

  PvlToXmlTranslationManager cubeLab(*(icube->label()),

                                    "$tgo/translations/tgoCassisExport.trn");

  cubeLab.Auto(pdsLabel);

  p.StandardPds4Label();

  QString outFile = ui.GetFileName("TO");

  p.WritePds4(outFile);

}

<?xml version="1.0" encoding="UTF-8"?>

<application name="tgocassisrdrgen" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://isis.astrogeology.usgs.gov/Schemas/Application/application.xsd">

  <brief>

    Converts CaSSIS cubes into PDS 4 standard format

  </brief>

  <description>

    SOMETHING

  </description>

  <history>

    <change name="Adam Paquette" date="2017-05-23">

      Original Version

    </change>

    <change name="Makayla Shepherd" date="2017-06-01">

      Added detached label.

    </change>

    <change name="Adam Paquette" date="2017-06-02">

      Added the cassis specific translation file for label output.

    </change>

    <change name="Adam Paquette" date="2017-06-04">

      Changed the order that the elements appear in the output label.

    </change>

    <change name="Marjorie Hahn" date="2017-06-05">

      Added a default test to ensure that if the exported PDS4 data is reingested, 

      then it is the same as the original cube.

    </change>

    <change name="Marjorie Hahn" date="2017-06-08">

      Moved code to write out .img and .xml PDS4 data to WritePds4 in ProcessExportPds4.

    </change>

  </history>

  <category>

    <missionItem>ExoMars Trace Gas Orbiter</missionItem>

  </category>

  <groups>

    <group name="Files">

      <parameter name="FROM">

        <type>cube</type>

        <fileMode>input</fileMode>

        <brief>

          Input RDR CaSSIS formated ISIS cube

        </brief>

        <description>

          Input cube that is a CaSSIS formated RDR cube, to be translated into a corresponding .img

          file and associated detached pds4 label. Currently, the cube must be a CaSSIS specific cube to

          be translated at all.

        </description>

        <filter>*.cub</filter>

      </parameter>

      <parameter name="TO">

        <type>filename</type>

        <fileMode>output</fileMode>

        <brief>

          Output IMG file. Also determines XML file name.

        </brief>

        <description>

          Output IMG file where the image data will be. The value that is entered also determines

          the name of the detached XML label, where the .img extension is replaced with .xml.

          Example: test.img is entered, the detached label would be named test.xml

        </description>

        <filter>*.img</filter>

      </parameter>

    </group>

  </groups>

</application>

BLANKS = "%-6s"    

LENGTH = "%-40s"

include $(ISISROOT)/make/isismake.tststree

APPNAME = tgocassisrdrgen

include $(ISISROOT)/make/isismake.tsts

commands: 

	$(APPNAME) from=$(INPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.cub \

	to=$(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.img > /dev/null;

	# Reingest the PDS4 data

	raw2isis from=$(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.img \

	to=$(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.cub \

	SAMPLES=2048 \

	LINES=254 \

	BITTYPE=REAL \

	BYTEORDER=LSB > /dev/null;

	# Compare the output cube from raw2isis to the original input cube to

	# ensure that they are identical

	cubediff from=$(INPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.cub \

	from2=$(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.cub \

	to=$(OUTPUT)/cubediffresults.txt > /dev/null;

	# Change the output xml file to a txt file for test comparison

	mv $(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.xml \

	$(OUTPUT)/CAS-MCO-2016-11-26T22.32.39.582-BLU-03025-00.txt > /dev/null;