Adds CentOS7 build environment (#515) (582e0a56) · Commits · aflab / astrogeology / ISIS3

environment_gcc4.yml

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		channels:
		- jessemapel
		- usgs-astrogeology
		- conda-forge
		- probcomp
		- defaults

		dependencies:
		- armadillo==8.200.0
		- blas==1.1=openblas
		- bullet==2.86.1=0
		- bz2file==0.98
		- bzip2==1.0.6=1
		- cmake==3.9.1=0
		- cspice==66=h470a237_3
		- curl==7.60.0=0
		- doxygen==1.8.14=0
		- eigen==3.3.3=0
		- embree==2.14.0=0
		- geos==3.5.1
		- geotiff==1.4.2=1
		- gmm==5.0
		- gmp==6.1.2=0
		- gsl==2.2.1=blas_openblas_3
		- hdf5==1.8.18=2
		- icu==58.2=0
		- jama==125
		- jpeg==9b=2
		- kakadu==1
		- krb5==1.14.2=0
		- libpng>=1.6.34
		- libprotobuf==3.5.2
		- libtiff==4.0.9=0
		- libxml2==2.9.7=0
		- make
		- mesalib==17.2.0=0
		- mysql==5.7.20
		- mysql-connector-c==6.1.6=0
		- nanoflann==1.2.2
		- ninja==1.7.2=0
		- nn==1.86.0=2
		# - numpy==1.13.3=py36_blas_openblas_200
		- openblas==0.2.19=2
		- opencv
		- openssl==1.0.2n=0
		- patchelf==0.9
		- pcl==1.8.1
		- pip==9.0.1
		- protobuf==3.5.2
		# - pyqt==5.6.0
		- python==3.6
		- qhull==7.2.0=0
		- qt=5.9.6
		- qwt=6.1.3
		- setuptools=38.5.1
		- sip==4.18
		- sqlite==3.13.0=1
		- suitesparse==4.5.4=blas_openblas_200
		- superlu==5.2.1=blas_openblas_201
		- tnt==126=0
		- wheel==0.30.0
		- x264==20131218
		- xalan-c==1.11
		- xerces-c==3.1.4=0
		- xorg-kbproto==1.0.7=1
		- xorg-libice
		- xorg-libsm
		- xorg-libx11==1.6.4=6
		- xorg-libxi
		- zlib==1.2.11=0

isis/src/base/objs/Calculator/Calculator_Linux_x86_64_CentOS7.truth

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		@@ -22,8 +22,8 @@ Square Root (sqrt[v1]): [ 1 1.41421 1.73205 ]
		Absolute value (-v1): [ 1 2 3 ]
		Log (log[v1]): [ 0 0.693147 1.09861 ]
		Log10 (log10[v1]): [ 0 0.30103 0.477121 ]
		LeftShift (v1<<scalar): [ 3 -nan -nan ]
		RightShift (v1>>scalar): [ -nan -nan 1 ]
		LeftShift (v1<<scalar): [ 3 nan nan ]
		RightShift (v1>>scalar): [ nan nan 1 ]
		Min (v1): [ 1 ]
		Max (v1): [ 3 ]
		GreaterThan (v1>v4): [ 0 0 1 ]
		@@ -47,7 +47,7 @@ TangentH (v1): [ 0.761594 0.964028 0.995055 ]
		Modulus (v1%v4): [ 1 0 1 ]
		Bitwise And (v1,v4): [ 0 2 2 ]
		Bitwise Or (v1,v4): [ 3 2 3 ]
		Square Root(-1): [ -nan ]
		Square Root(-1): [ nan ]
		Log(of 0): [ -inf ]
		-------------------------------------------------------
		ERROR When trying to do a left shift calculation, a shift value greater than the data size was encountered. Shifting by this value would erase all of the data.

isis/src/base/objs/ProgramLauncher/ProgramLauncher_Linux_x86_64_CentOS7.truth

+1 −12

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		@@ -4,16 +4,9 @@ Testing ls, grep, sed and pipes ...

		ProgramLauncher.cpp
		ProgramLauncher.h
		ProgramLauncher.o
		ProgramLauncher.truth
		Testing stats ...

		greyscale: Working
		0% Processed 10% Processed 20% Processed 30% Processed 40% Processed 50% Processed 60% Processed 70% Processed 80% Processed 90% Processed 100% Processed
		hist: Computing min/max for histogram
		0% Processed 10% Processed 20% Processed 30% Processed 40% Processed 50% Processed 60% Processed 70% Processed 80% Processed 90% Processed 100% Processed
		hist: Gathering histogram
		0% Processed 10% Processed 20% Processed 30% Processed 40% Processed 50% Processed 60% Processed 70% Processed 80% Processed 90% Processed 100% Processed
		Group = Results
		From = unitTest.cub
		Band = 1
		@@ -55,14 +48,10 @@ That is the reason for the OS specific truth files. Please ignore the exit codes

		terminate called after throwing an instance of 'Isis::IException'
		what(): ERROR This process (program) was executed by an existing Isis 3 process. However, we failed to establish a communication channel with the parent (launcher) process. The parent process has a PID of [999].
		PROGRAMMER ERROR Executing command [$ISISROOT/bin/stats from=\$base/testData/ab102401_ideal.cub -pid=999 -preference=\$ISISROOT/src/base/objs/Preference/TestPreferences] failed with return status [6].
		PROGRAMMER ERROR Executing command [$ISISROOT/bin/stats from=\$base/testData/ab102401_ideal.cub -pid=999 -preference=\$ISISROOT/TestPreferences] failed with return status [6].

		Testing using Isis 3 program as a system program without pid...

		stats: Computing min/max for histogram
		0% Processed 10% Processed 20% Processed 30% Processed 40% Processed 50% Processed 60% Processed 70% Processed 80% Processed 90% Processed 100% Processed
		stats: Gathering histogram
		0% Processed 10% Processed 20% Processed 30% Processed 40% Processed 50% Processed 60% Processed 70% Processed 80% Processed 90% Processed 100% Processed
		Group = Results
		From = unitTest.cub
		Band = 1

isis/src/base/objs/TrackingTable/TrackingTable_Linux_x86_64_CentOS7.truth

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		Unit test for TrackingTable


		Testing default constructor ...
		Record added: fileName1.cub, 1

		Testing constructor with a Table object ...
		Constructing Table ...
		First record : fileName1.cub, 1234567890
		Second record: fileName2.cub, 123
		Third record : fileName3.dat, 456789
		TrackingTable object created

		Testing the pixelToFileName method ...
		FileName with pixel value 2 does not exist and an exception is thrown.
		PROGRAMMER ERROR Cannot convert pixel [2] to a filename, pixel is below valid minimum [3].
		FileName with pixel value 3: fileName1.cub
		FileName with pixel value 4: fileName2.cub
		FileName with pixel value 5: fileName3.dat
		FileName with pixel value 6 does not exist and an exception is thrown.
		PROGRAMMER ERROR Cannot convert pixel [6] to a filename, pixel is above valid maximum [6].

		Testing the fileNameToPixel method ...
		Pixel value of FileName fileName1.cub: 3
		Pixel value of FileName fileName2.cub: 4
		Pixel value of FileName fileName3.cub: 5
		Pixel value of the non-existent FileName fileName4.cub (demonstrating its addition): 6

		Testing the toTable method ...
		First record : fileName1.cub, 1234567890, 3
		Second record: fileName2.cub, 123, 4
		Third record : fileName3.dat, 456789, 5
		Fourth record: fileName4.cub, 12345678901234567890, 6

		Creating a new TrackingTable object with the table returned from toTable method ...
		New TrackingTable object created

		Verifying that the pixel values are the same ...
		Pixel value of FileName fileName1.cub: 3
		Pixel value of FileName fileName2.cub: 4
		Pixel value of FileName fileName3.cub: 5
		Pixel value of FileName fileName4.cub: 6

		Testing that the Table returned from toTable on new TrackingTable matches ...
		First record : fileName1.cub, 1234567890, 3
		Second record: fileName2.cub, 123, 4
		Third record : fileName3.dat, 456789, 5
		Fourth record: fileName4.cub, 12345678901234567890, 6