Commit 25af3c5f authored by Ella Mae Lee's avatar Ella Mae Lee
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PROG: Missed this file, references #1358 

git-svn-id: http://subversion.wr.usgs.gov/repos/prog/isis3/trunk@5651 41f8697f-d340-4b68-9986-7bafba869bb8
parent c6c4e973

isis/src/docsys/build/doctoc.xml

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<?xml version="1.0" encoding="UTF-8" standalone="yes"?><tableofcontents><document>

<title>Backward Compatibility Policy</title>

<brief>Policy for ISIS backward compatibility for users</brief>

<description>

     Backward Compatibility Policy for user applications to help ensure

     processing scripts developed outside of the USGS are easier to maintain.

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/BackwardCompatibility/BackwardCompatibility.html</source>

</file>

</files>

</document>

<document>

<title>ISIS 3 Coding Standards and Style Guide</title>

<brief>Coding standards for ISIS 3 developers (effective February 1, 2012).</brief>

<description>

      This document will describe the coding standards for maintaining 

      ISIS 3 source code.  It was created to ensure that the 

      ISIS 3 package is programmed for consistency, readability, and ease

      of future maintenance. This document does not attempt to address every

      possible issue. However, the guidelines that have been outlined should not

      be deviated from, except under special situations.

    </description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/CodingStandards/CodingStandards.html</source>

</file>

</files>

</document>

<document>

<title>Command Line Usage</title>

<brief>

    Invoking ISIS programs from the UNIX command line

    </brief>

<description>

      How to run ISIS on the UNIX Command Line.

      Required reading before using the software in any scripting language.

    </description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/CommandLine/CommandLine.html</source>

</file>

</files>

</document>

<document>

<title>Conversion from ISIS 2 to ISIS 3</title>

<brief>Reasons and considerations to upgrade from ISIS 2 to ISIS 3</brief>

<description>The reasons, considerations, and major design changes related to the upgrade from ISIS 2 to ISIS 3</description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Conversion/Conversion.html</source>

</file>

</files>

</document>

<document>

<title>Credits</title>

<brief>Contributors to the ISIS software package</brief>

<description>

      A summary of USGS and non-USGS contributors to the ISIS

      software package

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Credits/Credits.html</source>

</file>

</files>

</document>

<document>

<title>Disclaimers</title>

<brief>Standard legalese regarding usage, trademarks, and privacy</brief>

<description>

      This section contain standard USGS comments regarding software

      accuracy, use of trademarks and tradenames, and other general

      disclaimers.

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Disclaimers/Disclaimers.html</source>

</file>

</files>

</document>

<document>

<title>Style Guide</title>

<brief>

      Object source code styles and conventions

    </brief>

<description>

      This document describes Object naming conventions,

      documenting source code for automatic documentation generation,

      and formatting documentation.

    </description>

<category>

<categoryItem>api</categoryItem>

<categoryItem>guide</categoryItem>

<categoryItem>technicaldoc</categoryItem>

</category>

<audience>

<target>programmer</target>

</audience>

<files>

<file hidden="" primary="true">

<type>HTML</type>

<subtitle>Introduction</subtitle>

<source>../documents/DocStyle/intro.html</source>

</file>

<file hidden="" primary="">

<type>HTML</type>

<subtitle>Mandatory Commands</subtitle>

<source>../documents/DocStyle/mandatoryCommands.html</source>

</file>

<file hidden="" primary="">

<type>HTML</type>

<subtitle>Useful Commands</subtitle>

<source>../documents/DocStyle/usefulCommands.html</source>

</file>

<file hidden="" primary="">

<type>HTML</type>

<subtitle>Example Header</subtitle>

<source>../documents/DocStyle/exampleHeader.html</source>

</file>

<file hidden="" primary="">

<type>HTML</type>

<subtitle>Example Implementation</subtitle>

<source>../documents/DocStyle/exampleImplementation.html</source>

</file>

<file hidden="" primary="">

<type>HTML</type>

<subtitle>HTML Quick Reference</subtitle>

<source>../documents/DocStyle/HTMLQuickRef.html</source>

</file>

</files>

</document>

<document>

<title>Environment and Preference Setup</title>

<brief>Setting up the UNIX environment and customizing ISIS preferences</brief>

<description>Setting up the UNIX environment to run ISIS and customizing the operation of ISIS</description>

<category>

<categoryItem>administration</categoryItem>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>intermediate</target>

<target>administrator</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/EnvironmentAndPreferencesSetup/EnvironmentAndPreferencesSetup.html</source>

</file>

</files>

</document>

<document>

<title>Error Dictionary</title>

<brief>Reference of error messages, their meanings, and resolving errors</brief>

<description>Reference of error messages, their meanings, and resolving errors</description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/ErrorDictionary/ErrorDictionary.html</source>

</file>

</files>

</document>

<document>

<title>Error Handling Facility</title>

<brief>Guide to the various aspects of the Error Handling Facility</brief>

<description>General overview of the Error Handling Facility, what form error messages take, 

how error messages differ between the command line and GUI, and Tips For Programmers.</description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/ErrorHandlingFacility/ErrorHandlingFacility.html</source>

</file>

</files>

</document>

<document>

<title>Glossary</title>

<brief>

      ISIS and Image Processing Terms and Definitions

    </brief>

<description>

      This article contains a collection of common definitions that are used frequently in

      ISIS and general image processing.

    </description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Glossary/Glossary.html</source>

</file>

</files>

</document>

<document>

<title>ISIS Application and Category Test How-to</title>

<brief>Guide to writing an application and category tests </brief>

<description>Guide to writing application and category tests using make software utility. This guide describes

      step by step the process of writing a test for an application or category.  The guide

      also gives general guidance on errors and common mistakes in writing a test.

    </description>

<category>

<categoryItem>xml</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/HowToApplicationCategoryTest/index.html</source>

</file>

</files>

</document>

<document>

<title>ISIS Application Examples How-to</title>

<brief>Guide to writing the examples section of ISIS Application XML</brief>

<description>Guide to writing application examples in the ISIS Application XML. All examples added to the official ISIS

                        application documentation will be automatically added to the application documentation pages. This guide

                        describes the examples section of the ISIS Application XML, provides instructions on how to add sample

                        files to an example, and gives general guidance for writing examples for ISIS.</description>

<category>

<categoryItem>xml</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/HowToApplicationExamples/index.html</source>

</file>

</files>

</document>

<document>

<title>ISIS Documents How-to</title>

<brief>Guide to writing documents using ISIS Documentation XML</brief>

<description>Guide to adding documents to the ISIS documentation tree. All documents added to the official ISIS

                        documentation will be automatically linked on the ISIS web pages and distributed with ISIS. This guide

                        describes the formats documents may be in, what types of documents may be added, and how to

                        write the ISIS Documentation XML metadata file that is used automatically add a document to the ISIS

                        system.</description>

<category>

<categoryItem>xml</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/HowToGeneralDocumentation/index.html</source>

</file>

</files>

</document>

<document>

<title>Installing ISIS</title>

<brief>Downloading and installing ISIS 3</brief>

<description>

      This document describes how to download and install a

      binary version of ISIS.

    </description>

<category>

<categoryItem>technicaldoc</categoryItem>

</category>

<audience>

<target>administrator</target>

</audience>

<files>

<file hidden="" primary="true">

<type>HTML</type>

<source>../documents/InstallGuide/index.html</source>

</file>

</files>

</document>

<document>

<title>ISIS 2 Technical Documentation</title>

<brief>Links to ISIS 2 Technical Documents</brief>

<description>List of links to ISIS 2 documents covering technical topics, such as administration, release notes, and installation.</description>

<category>

<categoryItem>hidden</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>isis2</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Isis2TechnicalDocs/index.html</source>

</file>

</files>

</document>

<document>

<title>ISIS 2 Tutorials</title>

<brief>Links to ISIS 2 tutorials, procedures, and how-to's</brief>

<description>List of links to ISIS 2 tutorials, procedures, and how-to's.</description>

<category>

<categoryItem>hidden</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>isis2</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Isis2Tutorials/index.html</source>

</file>

</files>

</document>

<document>

<title>ISIS 2 User Documentation</title>

<brief>Links to ISIS 2 User Documents</brief>

<description>List of links to documents covering general topics for users of ISIS 2.1</description>

<category>

<categoryItem>hidden</categoryItem>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>isis2</categoryItem>

</category>

<audience>

<target>developer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Isis2UserDocs/index.html</source>

</file>

</files>

</document>

<document>

<title>History</title>

<brief>History of USGS Astrogeology image processing software</brief>

<description>

      This is a history of the evolution of the USGS Astrogeology image 

      processing software since 1971.

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/IsisHistory/IsisHistory.html</source>

</file>

</files>

</document>

<document>

<title>Label Dictionary</title>

<brief>Reference to the objects and groups in ISIS cube labels</brief>

<description>

        This document is a reference to the various objects and groups, which can be found in ISIS labels.

        The definition of each object/group, the parameter meanings, and an example will be given.

    </description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/LabelDictionary/LabelDictionary.html</source>

</file>

</files>

</document>

<document>

<title>Logical Cube Format Guide</title>

<brief>Guide to core ISIS labels and a conceptual file structure for a cube</brief>

<description>

    This basic guide focuses on core ISIS labels and a conceptual file structure for a cube

    </description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/LogicalCubeFormatGuide/LogicalCubeFormatGuide.html</source>

</file>

</files>

</document>

<document>

<title>Overview</title>

<brief>Summary of ISIS</brief>

<description>

      This document summarizes ISIS and support for planetary space missions.

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/Overview/Overview.html</source>

</file>

</files>

</document>

<document>

<title>Pattern Matching</title>

<brief>

      A discussion of pattern matching techniques used in ISIS, designed to help

      users construct automatic registration templates.

    </brief>

<description>

      This article describes the pattern matching techniques used for automatic

      registration in ISIS.  The information is designed to give users an idea

      of how they can alter their automatic registration templates to improve

      their results from applications such as "pointreg" and "coreg".  This

      should also give programmers a better understanding of how AutoReg works.

    </description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>advanced</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/PatternMatch/PatternMatch.html</source>

</file>

</files>

</document>

<document>

<title>Preference Dictionary</title>

<brief>

    Complete reference to all user preference settings

    </brief>

<description>

      Complete reference to all user preference settings

    </description>

<category>

<categoryItem>reference</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/PreferenceDictionary/PreferenceDictionary.html</source>

</file>

</files>

</document>

<document>

<title>Programmer Guide</title>

<brief>Guide to Programming the ISIS software package</brief>

<description>Guide for the Programmers using ISIS software libraries, writing libraries and applications, working in the team development area, and writing XML files.</description>

<category>

<categoryItem>technicaldoc</categoryItem>

<categoryItem>guide</categoryItem>

<categoryItem>api</categoryItem>

</category>

<audience>

<target>programmer</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/ProgrammerGuide/ProgrammerGuide.html</source>

</file>

</files>

</document>

<document>

<title>References</title>

<brief>ISIS References/Citations and Preferred Acknowledgement</brief>

<description>

      Acknowledgement, Citations, and References for the ISIS software package.

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/References/References.html</source>

</file>

</files>

</document>

<document>

<title>Session Logs</title>

<brief>Guide to understanding, controlling, and reading Session Logs</brief>

<description>Guide to understanding, controlling, and reading Session Logs, a mechanism for users to keep track of work that they have done</description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>intermediate</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/SessionLogs/SessionLogs.html</source>

</file>

</files>

</document>

<document>

<title>System Architecture</title>

<brief>An in-depth "get started" tour of ISIS, including history, mechanics, and basic use.</brief>

<description>Take an in-depth "get started" tour of ISIS, from the software's history to an overview of the newest features. Learn the basics of working in the ISIS software environment.</description>

<category>

<categoryItem>guide</categoryItem>

</category>

<audience>

<target>user</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/SystemArchitecture/SystemArchitecture.html</source>

</file>

</files>

</document>

<document>

<title>User Rights Notice</title>

<brief>Licensing, copyright, distribution, and warranty information</brief>

<description>

      User Rights Notice

    </description>

<category>

<categoryItem>about</categoryItem>

</category>

<audience>

<target>all</target>

</audience>

<files>

<file hidden="" primary="">

<type>HTML</type>

<source>../documents/UserRights/UserRights.html</source>

</file>

</files>

</document>

</tableofcontents>