fixed hical having the wrong xml file (#608) (23e06ac7) · Commits · aflab / astrogeology / ISIS3

isis/src/mro/apps/hical/hicalbeta.xml→isis/src/mro/apps/hical/hical.xml

+39 −36

Original line number	Diff line number	Diff line
		<?xml version="1.0" encoding="UTF-8"?>
		<!-- $Id: hicalbeta.xml,v 1.15 2009/09/15 21:56:44 kbecker Exp $ -->
		<!-- $Id: hical.xml 3254 2011-09-19 05:11:01Z kbecker@GS.DOI.NET $ -->

		<application name="hicalbeta" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://isis.astrogeology.usgs.gov/Schemas/Application/application.xsd">
		<application name="hical" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://isis.astrogeology.usgs.gov/Schemas/Application/application.xsd">

		<brief>
		Performs radiometric calibration of HiRISE channel images
		@@ -9,7 +9,7 @@

		<description>
		<p>
		<b>hicalbeta</b> appiles radiometric calibration correction to HiRISE
		<b>hical</b> appiles radiometric calibration correction to HiRISE
		images. This particular version is deemed experimental, thus the beta
		designation. The radiometric calibration correction is performed on
		each individual HiRISE channel file (EDR) correcting for drift,
		@@ -56,7 +56,7 @@
		equal the total number of image lines. <br/>
		</li>
		</ul>
		Note that these data BLOBs are removed by <b>hicalbeta</b> in the output
		Note that these data BLOBs are removed by <b>hical</b> in the output
		file so that repeated runs of this application are prevented.
		</p>
		<p>
		@@ -144,7 +144,7 @@
		<p>
		The real power of the configuration file is its use of named Profiles.
		Profiles are groups of keywords that can be associated to a
		unique definition. The hicalbeta PVL configuration file
		unique definition. The hical PVL configuration file
		consists of a single <b>Hical</b> object with numerous named
		<b>Profile</b> groups. Each of the Profile groups must contain
		a <b>Name</b> keyword that uniquely identifies it within the
		@@ -215,16 +215,16 @@
		<PRE>

		# HiRISE Calibration Matricies configuration file
		# See documentation for the hicalbeta application on the content and form of
		# See documentation for the hical application on the content and form of
		# this file.
		Object = Hical

		Program = "hicalbeta"
		Program = "hical"

		Name = "HiMatrices"
		DefaultProfile = "HiMatrices"

		/* If you want to rerun hicalbeta, you must set PropagateTables to True. Use */
		/* If you want to rerun hical, you must set PropagateTables to True. Use */
		/* this in conjuction with Debug::SkipModule = True option for each module. */
		PropagateTables = False

		@@ -338,21 +338,21 @@ Object = Hical
		Module = ZeroDark

		/* Define the B matrix file reference */
		B = "$mro/calibration/matrices/beta/B_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
		B = "$mro/calibration/matrices/beta/B_TDI{TDI}_BIN{BIN}_hical_????.cub"
		SkipLines = 1
		Slope = "$mro/calibration/matrices/beta/t_slope_CH{CHANNEL}_hicalbeta_????.csv"
		Intercept = "$mro/calibration/matrices/beta/t_intercept_CH{CHANNEL}_hicalbeta_????.csv"
		Slope = "$mro/calibration/matrices/beta/t_slope_CH{CHANNEL}_hical_????.csv"
		Intercept = "$mro/calibration/matrices/beta/t_intercept_CH{CHANNEL}_hical_????.csv"

		/* As of version 0020, 9 March 2010, we will be using the following names and formats */
		/* We are calling this the DarkCurrent now. The filename will stay the same (with a .csv extension) */
		DarkCurrent = "$mro/calibration/matrices/beta/B_TDI{TDI}_BIN{BIN}_hicalbeta_????.csv"
		DarkCurrent = "$mro/calibration/matrices/beta/B_TDI{TDI}_BIN{BIN}_hical_????.csv"
		DarkCurrentColumnName = "{CCD}/{CHANNEL}"

		/* The slope and intercepts to the temperature-dependent correction to the dark current are given below. */
		DarkSlope = "$mro/calibration/matrices/beta/B_Temperature_Slope_hicalbeta_????.csv"
		DarkSlope = "$mro/calibration/matrices/beta/B_Temperature_Slope_hical_????.csv"
		DarkSlopeColumnName = "CH{CHANNEL}_TDI{TDI}"

		DarkIntercept = "$mro/calibration/matrices/beta/B_Temperature_Intercept_hicalbeta_????.csv"
		DarkIntercept = "$mro/calibration/matrices/beta/B_Temperature_Intercept_hical_????.csv"
		DarkInterceptColumnName = "CH{CHANNEL}_TDI{TDI}"

		/* Do filtering? */
		@@ -366,7 +366,7 @@ Object = Hical
		Module = GainNonLinearity

		/* Define the nonlinearity correction coefficients */
		NonLinearityGain = "$mro/calibration/matrices/beta/Gain_NonLinearity_BIN{BIN}_hicalbeta_????.csv"
		NonLinearityGain = "$mro/calibration/matrices/beta/Gain_NonLinearity_BIN{BIN}_hical_????.csv"
		NonLinearityGainRowName = "{CCD}_{CHANNEL}"
		End_Group

		@@ -380,12 +380,12 @@ Object = Hical
		Module = GainLineDrift

		SkipLines = 1
		/* Added "_hicalbeta" to filename as of 2008-04-02. This is consistant with */
		/* Added "_hical" to filename as of 2008-04-02. This is consistant with */
		/* naming convention used for the beta version of hical. */
		GainLineCoefficients = "$mro/calibration/matrices/beta/line_correct_{BIN}_hicalbeta_????.csv"
		GainLineCoefficients = "$mro/calibration/matrices/beta/line_correct_{BIN}_hical_????.csv"

		/* As of version 0020, 9 March 2010, these are more correctly, called the LineGainDrift correction*/
		LineGainDrift = "$mro/calibration/matrices/beta/Line_Gain_Drift_BIN{BIN}_hicalbeta_????.csv"
		LineGainDrift = "$mro/calibration/matrices/beta/Line_Gain_Drift_BIN{BIN}_hical_????.csv"
		LineGainDriftColumnHeader = True
		LineGainDriftRowName = "{CCD}/{CHANNEL}"
		End_Group
		@@ -397,10 +397,10 @@ Object = Hical
		Module = GainChannelNormalize

		/* Define the G matrix file reference */
		G = "$mro/calibration/matrices/beta/G_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
		G = "$mro/calibration/matrices/beta/G_TDI{TDI}_BIN{BIN}_hical_????.cub"

		/* As of version 0020, 9 March 2010, these coefficients have been renamed to Gains. */
		Gains = "$mro/calibration/matrices/beta/Gains_hicalbeta_????.csv"
		Gains = "$mro/calibration/matrices/beta/Gains_hical_????.csv"
		GainsRowName = "{BIN}"
		GainsColumnName = "{CCD}/{CHANNEL}"
		End_Group
		@@ -412,11 +412,11 @@ Object = Hical
		Module = GainFlatField

		/* Define the A matrix file reference */
		A = "$mro/calibration/matrices/beta/A_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
		A = "$mro/calibration/matrices/beta/A_TDI{TDI}_BIN{BIN}_hical_????.cub"

		/* As of version 0020, 9 March 2010, These have the same filename with a .csv extension.*/
		/* As of version 0020, 9 March 2010, These coefficients are now called Flats. */
		Flats = "$mro/calibration/matrices/beta/A_TDI{TDI}_BIN{BIN}_hicalbeta_????.csv"
		Flats = "$mro/calibration/matrices/beta/A_TDI{TDI}_BIN{BIN}_hical_????.csv"
		FlatsColumnName = "{CCD}/{CHANNEL}"
		End_Group

		@@ -522,7 +522,7 @@ End_Object
		<br><h1 align="center">Application Control Parameters</h1></br>
		<TABLE BORDER="1">
		<CAPTION>
		Description of main <b>hicalbeta</b> configuration
		Description of main <b>hical</b> configuration
		parameters. These parameters govern profile loading,
		filename pattern replacement and debugging operations.
		Note that keywords in this section are present in all
		@@ -566,12 +566,12 @@ End_Object
		FROM file to the TO file when the file is completed.
		This has some interesting implications. When False,
		all Table objects in the FROM file are removed in the
		TO file, which in effect prevents hicalbeta from being
		TO file, which in effect prevents hical from being
		able to run again. However, because of debugging
		capabilities, one may want to select which calibration
		modules are run. Setting this to True will propagate
		all Table objects (BLOBs) in the FROM file to the TO
		file so that hicalbeta can be run again to apply other
		file so that hical can be run again to apply other
		modules.
		</TD>
		</TR>
		@@ -635,7 +635,7 @@ End_Object
		the calibration process. This is very useful for
		debugging and seeing how each module contributes.
		Be sure to set <b>ProgagateTables</b> to True if you
		intend to perform subsequent runs of hicalbeta.
		intend to perform subsequent runs of hical.
		</TD>
		</TR>
		<TR>
		@@ -682,7 +682,7 @@ End_Object
		</TR>
		</TABLE>
		<p>
		The following tables describe <b>hicalbeta</b> module processing
		The following tables describe <b>hical</b> module processing
		overview. A general description of the module processing steps and
		configuration file parameters for the modules are provided. Note that
		each module contains a <b>Name</b> and <b>Module</b> parameter that
		@@ -696,7 +696,7 @@ End_Object
		profiles are modules. Multiple profiles can be loaded to fully
		define a set of module parameters. The order of potential profiles
		that are loaded in addition to the one requested directly in
		<b>hicalbeta</b> application is specified by the
		<b>hical</b> application is specified by the
		<i>ProfileOptions</i> keyword as described above.
		</p>
		<br><h1 align="center">ZeroBufferSmooth Module Parameters</h1> </br>
		@@ -886,7 +886,7 @@ End_Object
		component is determined. The default file name is
		"ReverseClockStatistics.XXXX.conf" where "XXXX" is a
		version number. Note that the contents of the
		composed hicalbeta configuration profile is used to
		composed hical configuration profile is used to
		provide initial values for the profile loaded out of
		this file.
		</CAPTION>
		@@ -988,7 +988,7 @@ End_Object
		because of the low number of in-flight dark frame images
		acquired--all bin modes were utilized to generate these
		linear fits.
		<b>hicalbeta</b> does a rebin to expand or contract the
		<b>hical</b> does a rebin to expand or contract the
		bin4 linear coefficients to bin8, bin2, or bin1, depending
		on the bin mode of the image being calibrated.
		</CAPTION>
		@@ -1043,7 +1043,7 @@ End_Object
		<br><h1 align="center">GainLineDrift Module Parameters</h1> </br>
		<TABLE BORDER="1">
		<CAPTION>
		The GainLineDrift module in hicalbeta uses the line
		The GainLineDrift module in hical uses the line
		correction coefficients which are contained in the file as
		patterned by the <i>LineGainDrift</i> as defined below.
		This file contains 4 parameters (C[1234]) and is applied
		@@ -1094,7 +1094,7 @@ End_Object
		<br><h1 align="center">GainNonLinearity Module Parameters</h1> </br>
		<TABLE BORDER="1">
		<CAPTION>
		The GainNonLinearity module in hicalbeta uses the
		The GainNonLinearity module in hical uses the
		nonlinearity coefficients that are derived as a function
		of binning mode. These coefficients are used in the
		following equations to correct for nonlinear gain
		@@ -1132,7 +1132,7 @@ End_Object
		<br><h1 align="center">GainChannelNormalize Module Parameters</h1> </br>
		<TABLE BORDER="1">
		<CAPTION>
		The GainChannelNormalize module in hicalbeta uses the
		The GainChannelNormalize module in hical uses the
		bin, TDI, CCD, and Channel dependent coefficients
		described below in the equation "GCN = GCNc * 128 / (TDI
		* bin^2)" where GCNc is the normalization coefficient
		@@ -1270,7 +1270,7 @@ End_Object
		<TD>
		Specifies the filter dependent gain correction factor.
		Note that these values are found in the BG, RED, and IR
		profiles and <b>hicalbeta</b> relies on the profile
		profiles and <b>hical</b> relies on the profile
		options to load the proper parameter at runtime.
		</TD>
		</TR>
		@@ -1407,6 +1407,9 @@ End_Object
		Renamed many of the modules to better reflect their function.
		Extensively updated the program documentation.
		</change>
		<change name="Kris Becker" date="2011-09-18">
		Merged hicalbeta changes into hical to make new release
		</change>
		</history>

		<category>
		@@ -1430,13 +1433,13 @@ End_Object
		<type>filename</type>
		<fileMode>input</fileMode>
		<defaultPath>$mro/calibration</defaultPath>
		<default><item>$mro/calibration/hicalbeta.????.conf</item></default>
		<default><item>$mro/calibration/hical.????.conf</item></default>
		<brief>
		File containing HiRISE calibration and matrix configuration parameters
		</brief>
		<filter>*.conf</filter>
		<description>
		This file is critical to the proper functioning of hicalbeta. It
		This file is critical to the proper functioning of hical. It
		contains parameters that are loaded to provide necessary data used
		in the calibration of HiRISE CCD channels. It is extensively
		documented in the main documentation section of this application.