Commit 09eec4ac authored by acpaquette's avatar acpaquette
Browse files

Q4 support sprint bug fixes PR (#5273) 



* Check if history blob buffer is null before executing memcpy (#5205)

* Check if history blob buffer is null before executing memcpy

* Updated CHANGELOG

* changed description for tgocassisrdrgen to be more descriptive than before (#5167)

* changed description for tgocassisrdrgen to be more descriptive than before.

* modifying the changelog to reflect doc changes

* fix typo

* Documentation fix for broken links in User Docs (#5182)

* doc changes for new links, need to scan other files for the same

* fixed remaining links

* typo

* fixed command line references link for ISIS3 Applications

* Removed version specification from conda install command (#5236)

* Clean Build Warnings (#5257)

* std::unary/binary_function to std:::function

* sprintf -> snprintf

* vsprintf -> vsnprintf

* fixed misc warnings

* bypass jenkins error

* Cmake mac 13 (#5261)

* added quotes to Utilities.cmake

* Added config for mac 13.4

* updated config to target macos13.5

* Segfault fix and tests (#5262)

* fixed map definition reference link (#5265)

* Update geos to 3.11.1 (#5266)

* Update geos to 3.11.1

* Fixed failing test

* fixes rclone recopying existing kernels (#5255)

* fixes rclone duplication

* updated changelog

* Updated script

* Addressed PR feedback

* cubeit attribute fix (#5268)

* cubeit attribute fix

* Update changelog

* Convert cholmod 32 bit to 64 bit calls (#5267)

* Updated cholmod calls to 64 bit

* changed int triple indices to long

* Fixed errorpropagation cholmod call

* Updated changelog

* Campt attribute fix (#5269)

* Prevent cube manager from setting the virtual band

* Pass potential cube attributes through to the cube manager in campt

* Added changelog entry

* Fixed change log entry

* Updated environment test

---------

Co-authored-by: default avatarChristine Kim <125395064+chkim-usgs@users.noreply.github.com>
Co-authored-by: default avatarAnton Hibl <75855379+antonhibl@users.noreply.github.com>
Co-authored-by: default avatarAustin Sanders <arsanders@usgs.gov>
Co-authored-by: default avatarAmy Stamile <74275278+amystamile-usgs@users.noreply.github.com>
Co-authored-by: default avatarJacob Cain <115182890+jrcain-usgs@users.noreply.github.com>
parent 048d7938

CHANGELOG.md

+7 −0
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@@ -36,6 +36,7 @@ release. 
## [Unreleased]



### Changed

- Changed cholmod 32 bit calls to 64 bit calls [#5173](https://github.com/DOI-USGS/ISIS3/issues/5173) and [#5176](https://github.com/DOI-USGS/ISIS3/issues/5176)



### Added
@@ -44,6 +45,11 @@ release. 
### Removed



### Fixed

- Updated History constructor to check for invalid BLOB before copying History BLOB to output cube [#4966](https://github.com/DOI-USGS/ISIS3/issues/4966)

- Fixed downloadIsisData script copying existing files with every rclone download [#5245](https://github.com/DOI-USGS/ISIS3/issues/5245)

- Fixed gaussstretch segmentation fault error and refactored gaussstretch files/tests to use gtest [#5240](https://github.com/DOI-USGS/ISIS3/issues/5240)

- Fixed `cubeit` attribute error to allow attribute specification on the output cube filename [#5234](https://github.com/DOI-USGS/ISIS3/issues/5234)

- Fixed `campt` to handle input band selection attribute correctly [#5234](https://github.com/DOI-USGS/ISIS3/issues/5235)



## [8.0.0] - 2023-04-19
@@ -51,6 +57,7 @@ release. 
- Updated download location for Dawn source files to include updated pck from HAMO Dawn mosaic [#4001](https://github.com/USGS-Astrogeology/ISIS3/issues/4001)

- Pinned cspice version to 67 [#5083](https://github.com/USGS-Astrogeology/ISIS3/issues/5083) 

- Changed the `rsync` related commands in the ISIS SPICE Web Service document to `downloadIsisData` command

- Updated documentation for `tgocassisrdrgen` to be more descriptive and accurate.

- Updated Geos from version 3.7 to 3.9 [#3627](https://github.com/DOI-USGS/ISIS3/issues/3627)

- Updated Ale to version 0.9.1 [#5209](https://github.com/DOI-USGS/ISIS3/pull/5209)

- Changed buildCondaRelease.py numpy version from 1.23 to 1.22 to resolve spiceinit warning messages [#5224](https://github.com/DOI-USGS/ISIS3/issues/5224)

Jenkinsfile

+1 −1
Original line number Diff line number Diff line
@@ -31,7 +31,7 @@ pipeline { 
                conda activate isis > /dev/null

                conda config --env --set channel_priority flexible

                conda install -c conda-forge python=3 findutils

                mamba env update -f environment.yml --prune

                conda env update -f environment.yml --prune

                conda activate isis

                mamba install -c conda-forge git

                git submodule update --init --recursive

README.md

+1 −1
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@@ -96,7 +96,7 @@ This installation guide is for ISIS users interested in installing ISIS (3.6.0)+ 
1. The environment is now ready to download ISIS and its dependencies:



    ```bash

    conda install -c usgs-astrogeology isis=7.0.0

    conda install -c usgs-astrogeology isis

    ```



1. Finally, setup the environment variables:

environment.yml

+1 −1
Original line number Diff line number Diff line
@@ -20,7 +20,7 @@ dependencies: 
  - eigen < 3.4

  - embree>=2.17,<3

  - ffmpeg

  - geos>=3.9,<3.10

  - geos =3.11.1

  - geotiff

  - gmp

  - graphviz

isis/cmake/Utilities.cmake

+1 −1
Original line number Diff line number Diff line
@@ -171,7 +171,7 @@ function(get_os_version text) 
    # Format the string

    string(REGEX MATCH "[0-9]+.[0-9]+.[0-9]+" version "${result}")

    string(REGEX MATCH "^[0-9]+.[0-9]+" version "${version}")

    string(REPLACE "." "_" version ${version})

    string(REPLACE "." "_" version "${version}")



    set(name   "MacOSX")

    set(prefix "Darwin_x86_64_")