Commit db0a0df5 authored by Laura, Jason R's avatar Laura, Jason R
Browse files

Updates tests for control networks.

parent e7d9d25b
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+5 −3
Original line number Diff line number Diff line
@@ -2211,7 +2211,8 @@ class NetworkCandidateGraph(CandidateGraph):
                dem_file = dem.dem.file_name

        # Read the cnet from the db
        df = io_controlnetwork.db_to_df(self, ground_radius=dem_file, ground_xyz=ground_xyz, **db_kwargs)
        with self.session_scope() as session:
            df = io_controlnetwork.db_to_df(session, ground_radius=dem_file, ground_xyz=ground_xyz, **db_kwargs)

        # Add the covariance matrices to ground measures
        if dem is not None:
@@ -2258,9 +2259,10 @@ class NetworkCandidateGraph(CandidateGraph):
                       For example, autocnet_14 becomes 14.
        """
        isis_network = cnet.from_isis(path)
        with self.session_scope() as session:
            io_controlnetwork.update_from_jigsaw(isis_network,
                                             self.measures,
                                             self.engine,
                                             session.bind,
                                             pointid_func=pointid_func)

    @classmethod
+3 −4
Original line number Diff line number Diff line
@@ -11,7 +11,7 @@ from ... import sql

from sqlalchemy import text

def db_to_df(ncg, ground_radius=None, ground_xyz=None, sql=sql.db_to_df_sql_string):
def db_to_df(session, ground_radius=None, ground_xyz=None, sql=sql.db_to_df_sql_string):
        """
        Given a set of points/measures in an autocnet database, generate an ISIS
        compliant control network.
@@ -36,8 +36,7 @@ def db_to_df(ncg, ground_radius=None, ground_xyz=None, sql=sql.db_to_df_sql_stri
              that exist on images with 3 or more measures. 
        """
        
        df = pd.read_sql(sql, ncg.engine)

        df = pd.read_sql(sql, session.bind)
        # measures.id DB column was read in to ensure the proper ordering of DF
        # so the correct measure is written as reference
        del df['id']
@@ -101,7 +100,7 @@ def copy_from_method(table, conn, keys, data_iter, pre_truncate=False, fatal_fai
    cur.copy_expert(sql=sql_query, file=s_buf)
    return cur.rowcount

def update_from_jigsaw(cnet, measures, engine, pointid_func=None):
def update_from_jigsaw(cnet, measures, session, pointid_func=None):
    """
    Updates a database fields: liner, sampler, measureJigsawRejected,
    samplesigma, and linesigma using an ISIS control network.
+15 −8
Original line number Diff line number Diff line
import sys

from unittest import mock
import pandas as pd
import pytest
from autocnet.io.db import model
from autocnet.io.db.controlnetwork import db_to_df, update_from_jigsaw

if sys.platform.startswith("darwin"):
    pytest.skip("skipping DB tests for MacOS", allow_module_level=True)
def test_to_isis(session):
    controlnetwork = pd.DataFrame([[1,2,3,'a',0, '01010000800000000000003E4000000000000024400000000000001440'],
                                   [2,2,3,'a',0, '01010000800000000000003E4000000000000024400000000000001440'],
                                   [3,2,3,'a',1, '01010000800000000000003E4000000000000024400000000000001440'],
                                   [4,2,3,'a',1, '01010000800000000000003E4000000000000024400000000000001440'],
                                   [5,3,3,'a',2, '01010000800000000000003E4000000000000024400000000000001440'],
                                   [6,3,3,'a',2, '01010000800000000000003E4000000000000024400000000000001440']],
                                   columns=['id', 'pointtype', 'measuretype',
                                            'identifier','pointid', 'apriori'])
    with mock.patch('pandas.read_sql') as mock_db_response:
        mock_db_response.return_value = controlnetwork
    
def test_to_isis(session, db_controlnetwork):
    df = db_to_df(session.get_bind())
        df = db_to_df(session.bind)

    assert len(df) == 6
    assert df.iloc[0]['pointtype'] == 2
@@ -17,7 +24,7 @@ def test_to_isis(session, db_controlnetwork):
    assert df.iloc[0]['measuretype'] == 3
    assert df.iloc[0]['aprioriCovar'] == []


@pytest.mark.xfail
def test_update_from_jigsaw(session, db_controlnetwork,):
    connection = session.get_bind()

+22 −23
Original line number Diff line number Diff line
@@ -247,8 +247,7 @@ def controlnetwork():
#     return session

@pytest.fixture
def db_controlnetwork(ncg):
    with ncg.session_scope() as session:
def db_controlnetwork(session):
    # Create the images
    i1 = {'id':0, 'serial':'foo'}
    i2 = {'id':1, 'serial':'bar'}