Commit 760b5f73 authored by Nelson, Gavin (Contractor) Scott's avatar Nelson, Gavin (Contractor) Scott
Browse files

Ci setup

parent 74799fdc

.gitlab-ci.yml

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image: condaforge/mambaforge:latest

stages:

  - test

unit-test-job: 

  stage: test

  script:

    - apt-get --allow-releaseinfo-change update -y

    - apt-get -y upgrade

    - apt-get install -y libgomp1

    - apt-get install -y libgl1-mesa-glx

    - mamba env create -f environment.yml --prefix /autocnet

    - /autocnet/bin/pytest .

  rules:

  - if: $CI_PIPELINE_SOURCE == 'merge_request_event'
 
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docker/Dockerfile→Dockerfile

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FROM continuumio/miniconda3



FROM usgsastro/miniconda3

WORKDIR /root



# OpenCV deps

RUN apt-get update

RUN apt-get --allow-releaseinfo-change update -y

RUN apt-get -y upgrade

RUN apt-get install -y libgomp1

RUN apt-get install -y libgl1-mesa-glx



# Anaconda environment

ADD environment.yml /root

RUN conda env update -f environment.yml

RUN conda install -c conda-forge mamba

RUN mamba env update -f environment.yml



# Clone source

RUN git clone https://github.com/USGS-Astrogeology/autocnet.git

WORKDIR /root/autocnet
 
ADD . /root

cmd pytest
 
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docker/README.md

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To Download:

    docker pull evindunn/autocnet



To Build (From directory with Dockerfile and environment.yml):

    docker build -t autocnet .



To Run:

    docker run -it --name [container_name] autocnet

docker/environment.yml

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name: root

prefix: /opt/conda

channels:

  - conda-forge

  - usgs-astrogeology

  - menpo

dependencies:

  - python=3

  - cython

  - cyvlfeat

  - matplotlib

  - dill

  - gdal

  - geopandas

  - jupyter

  - networkx

  - numexpr

  - numpy

  - opencv

  - pandas

  - plio

  - pyyaml

  - runipy

  - scipy

  - shapely

  - sqlalchemy

  - vlfeat

  - pip:

    - pillow

    - protobuf

    - pvl

    - pysal

    - pytest

    - pytest-coverage

environment.yml

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name: root

prefix: /opt/conda

channels:

  - conda-forge

  - usgs-astrogeology
@@ -7,8 +9,11 @@ dependencies: 
  - python>=3

  - coveralls

  - csmapi

  - cython

  - cyvlfeat

  - matplotlib

  - dill

  - gdal

  - fakeredis

  - geoalchemy2

  - geopandas
@@ -19,29 +24,35 @@ dependencies: 
  - ipykernel

  - jupyter

  - kalasiris

  - knoten>= 0.2.0,<1.0

  - knoten=0.2.0

  - ncurses

  - networkx >=2, <3

  - networkx=2

  - numexpr

  - numpy

  - opencv <= 3.5

  - pillow

  - pip

  - plio>=1.3

  - pandas

  - pyyaml

  - plurmy

  - psycopg2

  - proj>=7.0.0,<8

  - pvl>=1.0

  - proj=7.0.0

  - pvl = 1.0

  - pyproj

  - pytest

  - pytest-cov

  - pytest-mock

  - runipy

  - richdem

  - scikit-image>=0.17

  - scikit-image=0.17

  - scikit-learn

  - scipy<=1.2.1

  - scipy=1.2.1

  - shapely

  - sqlalchemy>=1.4,<1.5

  - sqlalchemy-utils>=0.37.0

  - sqlalchemy=1.4

  - sqlalchemy-utils=0.37.0

  - redis-py

  - usgscsm

  - vlfeat

  - pip

  - protobuf

  - pysal
 
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