Commit 420e66d5 authored by Jay's avatar Jay Committed by jay
Browse files

Fixed F tests.

parent fc50e538
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+1 −1
Original line number Diff line number Diff line
@@ -78,7 +78,7 @@ class TestSpatialSuppression(unittest.TestCase):
        self.suppression_obj.error_k = 0.05
        self.assertEqual(self.suppression_obj.error_k, 0.05)

        self.assertEqual(self.suppression_obj.nvalid, None)
        self.assertEqual(self.suppression_obj.nvalid, 0)
        self.assertIsInstance(self.suppression_obj.df, pd.DataFrame)

    def test_suppress_non_optimal(self):
+4 −17
Original line number Diff line number Diff line
@@ -46,6 +46,7 @@ class TestHomography(unittest.TestCase):
            h = transformations.Homography(np.arange(4).reshape(2,2),
                                           np.arange(3), np.arange(3), None)


class TestFundamentalMatrix(unittest.TestCase):

    def test_FundamentalMatrix(self):
@@ -61,24 +62,10 @@ class TestFundamentalMatrix(unittest.TestCase):
        tp /= tp[-1, :np.newaxis]

        F = transformations.FundamentalMatrix(static_F,
                                              pd.DataFrame(fp, columns=['x', 'y']),
                                              pd.DataFrame(tp.T[:, :2], columns=['x', 'y']),
                                              pd.DataFrame(fph, columns=['x', 'y', 'h']),
                                              pd.DataFrame(tp.T, columns=['x', 'y', 'h']),
                                              mask=pd.Series(True, index=np.arange(fp.shape[0])))

        self.assertAlmostEqual(F.determinant, 0.624999, 5)
        self.assertIsInstance(F.error, pd.Series)
        self.assertIsInstance(F.error, pd.DataFrame)

        # This should raise an error.
        F.refine()
        self.assertIsInstance(F.error, pd.DataFrame)
        self.assertEqual(len(F._action_stack), 1)

        # Previous error should preclude do/undo
        F.rollback()
        self.assertEqual(F._current_action_stack, 0)
        F.rollforward()
        self.assertEqual(F._current_action_stack, 0)

        F._clean_attrs()
        self.assertNotIn('_error', F.__dict__)
+6 −77
Original line number Diff line number Diff line
@@ -175,71 +175,8 @@ class FundamentalMatrix(TransformationMatrix):
            compute this homography
    """

    def refine(self, method=ps.esda.mapclassify.Fisher_Jenks, df=None, bin_id=0, **kwargs):
        """
        Refine the fundamental matrix by accepting some data classification
        method that accepts an ndarray and returns an object with a bins
        attribute, where bins are data breaks.  Using the bin_id, mask
        all values greater than the selected bin.  Then compute a
        new fundamental matrix.

        The matrix is "refined" based on the reprojection errors for
        each point.

        Parameters
        ----------

        method : object
                 A function that accepts and ndarray and returns an object
                 with a bins attribute

        df      : dataframe
                Dataframe (from which a ndarray will be extracted) to pass to the method.

        bin_id : int
                 The index into the bins object.  Data classified > this
                 id is masked

        kwargs : dict
                 Keyword args supported by the data classifier

        Returns
        -------
        FundamentalMatrix : object
                            A fundamental matrix class object

        mask : series
               A bool mask with index attribute identifying the valid
               data in the new fundamental matrix.
        """
        # Perform the data classification
        if df is None:
            df = self.error
        fj = method(df.values.ravel(), **kwargs)
        bins = fj.bins
        # Mask the data that falls outside the provided bins
        mask = df.iloc[:, 0] <= bins[bin_id]
        new_x1 = self.x1.iloc[mask[mask == True].index]
        new_x2 = self.x2.iloc[mask[mask == True].index]
        fmatrix, new_mask = compute_fundamental_matrix(new_x1.values, new_x2.values)
        mask[mask == True] = new_mask

        # Update the current state
        self[:] = fmatrix
        self.mask = mask

        # Update the action stack
        try:
            state_package = {'arr': fmatrix.copy(),
                             'mask': self.mask.copy()}

            self._action_stack.append(state_package)
            self._current_action_stack = len(self._action_stack) - 1  # 0 based vs. 1 based
            self._clean_attrs()
            self._notify_subscribers(self)
        except:
            warnings.warn('Refinement outlier detection removed all observations.',
                          UserWarning)
    def refine(self):
        pass

    def _clean_attrs(self):
        for a in ['_error', '_determinant', '_condition']:
@@ -289,24 +226,16 @@ class FundamentalMatrix(TransformationMatrix):

        x1 : dataframe
            n,3 dataframe of homogeneous coordinates with the same
            length as argument a

        mask : Series
               Index to be used in the returned dataframe
            length as argument x

        Returns
        -------

        df : dataframe
             With columns for x_residual, y_residual, rmse, and
             error contribution.  The dataframe also has cumulative
             x, t, and total RMS statistics accessible via
             df.x_rms, df.y_rms, and df.total_rms, respectively.
        F_error : ndarray
                  n,1 vector of reprojection errors
        """

        # Normalize the vector
        l_norms = normalize_vector(x.dot(self.T))

        F_error = np.abs(np.sum(l_norms * x1, axis=1))

        return F_error
+2 −2
Original line number Diff line number Diff line
@@ -106,7 +106,7 @@ class TestUtils(unittest.TestCase):
        y = utils.normalize_vector(x)
        np.testing.assert_array_almost_equal(np.array([ 0.70710678,  0.70710678,  0.70710678]), y)

        x = np.repeat(np.arange(4), 3).reshape(-1, 3)
        x = np.repeat(np.arange(1,5), 3).reshape(-1, 3)
        y = utils.normalize_vector(x)
        truth = np.tile(np.array([ 0.70710678,  0.70710678,  0.70710678]), 4)
        truth = np.tile(np.array([ 0.70710678,  0.70710678,  0.70710678]), 4).reshape(4,3)
        np.testing.assert_array_almost_equal(truth, y)
+2 −1
Original line number Diff line number Diff line
@@ -31,7 +31,8 @@ def normalize_vector(line):
        n = np.sqrt(line[:, 0]**2 + line[:, 1]**2).reshape(-1, 1)
    except:
        n = np.sqrt(line[0]**2 + line[1]**2)
    line /= n
    print(line, n)
    line = line / n
    return line