Commit 3905baff authored by Lauren Adoram-Kershner's avatar Lauren Adoram-Kershner Committed by jlaura
Browse files

adds job names to cluster submissions and changes subpixel register log naming convention (#370)

parent 7e060b0b

autocnet/graph/network.py

+1 −0
Original line number Diff line number Diff line
@@ -1409,6 +1409,7 @@ class NetworkCandidateGraph(CandidateGraph): 


        # Submit the jobs

        submitter = Slurm('acn_submit',

                     job_name=function,

                     mem_per_cpu=config['cluster']['processing_memory'],

                     time=walltime,

                     partition=config['cluster']['queue'],

autocnet/matcher/subpixel.py

+2 −1
Original line number Diff line number Diff line
@@ -546,9 +546,10 @@ def cluster_subpixel_register_points(iterative_phase_kwargs={'size': 71}, 


    # Submit the jobs

    submitter = Slurm('acn_subpixel',

                 job_name='subpixel_register_points',

                 mem_per_cpu=config['cluster']['processing_memory'],

                 time=walltime,

                 partition=config['cluster']['queue'],

                 output=config['cluster']['cluster_log_dir']+'/slurm-%A_%a.out')

                 output=config['cluster']['cluster_log_dir']+f'/autocnet.subpixel_register-%j')

    submitter.submit(array='1-{}'.format(job_counter), chunksize=chunksize)

    return job_counter

autocnet/spatial/overlap.py

+1 −0
Original line number Diff line number Diff line
@@ -106,6 +106,7 @@ def cluster_place_points_in_overlaps(size_threshold=0.0007, 
        rqueue.rpush(queuename, json.dumps(msg, cls=JsonEncoder))

    # Submit the jobs

    submitter = Slurm('acn_overlaps',

                 job_name='place_points',

                 mem_per_cpu=config['cluster']['processing_memory'],

                 time=walltime,

                 partition=config['cluster']['queue'],