Reworked Dockerfile environment for NetworkX2

# Anaconda environment

ADD environment.yml /root

RUN conda install -y python=3.5.4

RUN conda env update -f environment.yml

RUN pip install pytest pytest-coverage

# Clone source

RUN git clone https://github.com/USGS-Astrogeology/autocnet.git

name: root

prefix: /opt/conda

channels:

- menpo

- jlaura

  - conda-forge

- defaults

  - usgs-astrogeology

  - menpo

dependencies:

- affine=2.1.0=py_1

- blas=1.1=openblas

- bleach=2.0.0=py35_0

- bzip2=1.0.6=1

- ca-certificates=2017.7.27.1=0

- cairo=1.14.6=4

- certifi=2017.7.27.1=py35_0

- chrpath=0.16=0

- click=6.7=py35_0

- click-plugins=1.0.3=py35_0

- cligj=0.4.0=py35_0

- curl=7.54.1=0

- cycler=0.10.0=py35_0

- cython=0.26.1=py35_0

- dbus=1.10.22=0

- decorator=4.1.2=py35_0

- descartes=1.1.0=py35_0

- dill=0.2.6=py35_0

- entrypoints=0.2.3=py35_1

- expat=2.2.1=0

- ffmpeg=3.2.4=1

- fiona=1.7.9=py35_1

- fontconfig=2.12.1=4

- freetype=2.7=1

- freexl=1.0.2=2

- gdal=2.1.3=py35_5

- geopandas=0.3.0=py35_0

- geos=3.5.1=1

- gettext=0.19.7=1

- giflib=5.1.4=0

- glib=2.51.4=0

- gmp=6.1.2=0

- gst-plugins-base=1.8.0=0

- gstreamer=1.8.0=1

- h5py=2.7.1=py35_1

- harfbuzz=1.3.4=2

- hdf4=4.2.12=0

- hdf5=1.8.18=1

- html5lib=0.999999999=py35_0

- icu=58.1=1

- ipykernel=4.6.1=py35_0

- ipython=6.2.0=py35_0

- ipython_genutils=0.2.0=py35_0

- ipywidgets=7.0.1=py_2

- jasper=1.900.1=4

- jedi=0.10.2=py35_0

- jinja2=2.9.6=py35_0

- jpeg=9b=0

- json-c=0.12.1=0

- jsonschema=2.6.0=py35_0

- jupyter=1.0.0=py35_0

- jupyter_client=5.1.0=py35_0

- jupyter_console=5.1.0=py35_0

- jupyter_core=4.3.0=py35_0

- kealib=1.4.7=3

- krb5=1.14.2=0

- libdap4=3.18.3=2

- libffi=3.2.1=3

- libiconv=1.14=4

- libnetcdf=4.4.1.1=6

- libpng=1.6.28=1

- libpq=9.6.3=0

- libsodium=1.0.10=0

- libspatialindex=1.8.5=1

- libspatialite=4.3.0a=15

- libssh2=1.8.0=1

- libtiff=4.0.6=7

- libuuid=1.0.3=1

- libwebp=0.5.2=7

- libxcb=1.12=1

- libxml2=2.9.5=0

- markupsafe=1.0=py35_0

- matplotlib=2.0.2=py35_2

- mistune=0.7.4=py35_0

- munch=2.2.0=py35_0

- nbconvert=5.3.1=py_1

- nbformat=4.4.0=py35_0

- ncurses=5.9=10

- networkx=1.11=py35_0

- notebook=5.1.0=py35_0

- numexpr=2.6.2=py35_1

- numpy=1.13.1=py35_blas_openblas_200

- openblas=0.2.19=2

- opencv=3.2.0=np113py35_blas_openblas_204

- openjpeg=2.2.0=0

- openssl=1.0.2l=0

- pandas=0.20.3=py35_1

- pandoc=1.19.2=0

- pandocfilters=1.4.1=py35_0

- pcre=8.39=0

- pexpect=4.2.1=py35_0

- pickleshare=0.7.4=py35_0

- pip=9.0.1=py35_0

- pixman=0.34.0=0

- proj4=4.9.3=4

- prompt_toolkit=1.0.15=py35_0

- protobuf=3.0.0b2=py35_0

- psycopg2=2.7.3.1=py35_0

- ptyprocess=0.5.2=py35_0

- pvl=0.3.0=py35_0

- pygments=2.2.0=py35_0

- pyparsing=2.2.0=py35_0

- pyproj=1.9.5.1=py35_0

- pyqt=5.6.0=py35_4

- pysal=1.13.0=py35_0

- python-dateutil=2.6.1=py35_0

- pytz=2017.2=py35_0

- pyyaml=3.12=py35_1

- pyzmq=16.0.2=py35_2

- qt=5.6.2=3

- qtconsole=4.3.1=py35_0

- readline=6.2=0

- rtree=0.8.3=py35_0

- ruby=2.4.1=0

- scipy=0.19.1=py35_blas_openblas_202

- setuptools=36.3.0=py35_0

- shapely=1.6.1=py35_1

- simplegeneric=0.8.1=py35_0

- sip=4.18=py35_1

- six=1.10.0=py35_1

- sqlalchemy=1.1.13=py35_0

- sqlite=3.13.0=1

- terminado=0.6=py35_0

- testpath=0.3.1=py35_0

- tk=8.5.19=2

- tornado=4.5.2=py35_0

- traitlets=4.3.2=py35_0

- wcwidth=0.1.7=py35_0

- webencodings=0.5=py35_0

- wheel=0.29.0=py35_0

- widgetsnbextension=3.0.3=py35_2

- x264=20131217=3

- xerces-c=3.1.4=3

- xorg-kbproto=1.0.7=1

- xorg-libice=1.0.9=2

- xorg-libsm=1.2.2=2

- xorg-libx11=1.6.4=6

- xorg-libxau=1.0.8=3

- xorg-libxdmcp=1.1.2=3

- xorg-libxext=1.3.3=2

- xorg-libxrender=0.9.10=0

- xorg-libxt=1.1.5=0

- xorg-renderproto=0.11.1=1

- xorg-xextproto=7.3.0=1

- xorg-xproto=7.0.31=6

- xz=5.2.3=0

- yaml=0.1.6=0

- zeromq=4.2.1=1

- zlib=1.2.8=3

- libgfortran=3.0.0=1

- util-linux=2.21=0

- plio=0.1.0=py35_0

  - python=3

  - cython

  - cyvlfeat

  - matplotlib

  - dill

  - gdal

  - geopandas

  - jupyter

  - networkx

  - numexpr

  - numpy

  - opencv

  - pandas

  - plio

  - pyyaml

  - runipy

  - scipy

  - shapely

  - sqlalchemy

  - vlfeat

  - pip:

  - coverage==4.4.1

  - ipython-genutils==0.2.0

  - jupyter-client==5.1.0

  - jupyter-console==5.1.0

  - jupyter-core==4.3.0

  - libpysal==3.0.1

  - olefile==0.44

  - pillow==4.2.1

  - prompt-toolkit==1.0.15

  - py==1.4.34

  - pytest==3.2.3

  - pytest-cov==2.5.1

  - pytest-cover==3.0.0

  - pytest-coverage==0.0

prefix: /opt/conda

    - pillow

    - protobuf

    - pvl

    - pysal

    - pytest

    - pytest-coverage